# Addressing the tissue specificity of U5 snRNP spliceosomopathies

**Authors:** Rahmat Azhari Kemal, Raymond T. O’Keefe

PMC · DOI: 10.3389/fcell.2025.1572188 · Frontiers in Cell and Developmental Biology · 2025-04-08

## TL;DR

This paper explores how mutations in U5 snRNP spliceosome proteins lead to tissue-specific diseases despite the spliceosome being essential in all cells.

## Contribution

The paper proposes using patient-derived iPSCs and metabolomic studies to better understand the tissue-specific effects of U5 snRNP variants.

## Key findings

- Cell and animal models replicate human clinical specificity of spliceosomopathies.
- Metabolomic studies may reveal new insights into the consequences of U5 snRNP variants.
- Analysis of spliceosomal protein complexes could uncover molecular pathogenesis.

## Abstract

Precursor mRNA (pre-mRNA) must undergo splicing to remove intron sequences and join exons. This splicing process is catalysed by an RNA/protein complex called the spliceosome. At the centre of the catalytic spliceosome is the U5 small nuclear ribonucleoprotein (snRNP). Pathogenic variants in U5 snRNP core proteins are associated with various diseases commonly known as spliceosomopathies. Variants in TXNL4A and EFTUD2 manifest in craniofacial malformations while variants in PRPF8 and SNRNP200 manifest in retinitis pigmentosa. This perspective highlights research addressing how these specific manifestations come about as the spliceosome is required in all cells and at all developmental stages. Cell and animal models can replicate the human clinical specificity providing explanations for the specificity of the disorders. We propose that future research could benefit from models originating from patient-derived induced pluripotent stem cells (iPSCs) and isogenic controls to compare the coding and non-coding transcriptomic perturbations. Analysis of spliceosomal protein complexes and their interactome could also uncover novel insights on molecular pathogenesis. Finally, as studies highlight changes in metabolic processes, metabolomic studies could become a new venture in studying the consequences of U5 snRNP variants.

## Linked entities

- **Genes:** TXNL4A (thioredoxin like 4A) [NCBI Gene 10907], EFTUD2 (elongation factor Tu GTP binding domain containing 2) [NCBI Gene 9343], PRPF8 (pre-mRNA processing factor 8) [NCBI Gene 10594], SNRNP200 (small nuclear ribonucleoprotein U5 subunit 200) [NCBI Gene 23020]
- **Proteins:** U5snRNP (U5 small nuclear ribonucleoprotein 116 kDa subunit)
- **Diseases:** retinitis pigmentosa (MONDO:0008377)

## Full-text entities

- **Genes:** PRPF8 (pre-mRNA processing factor 8) [NCBI Gene 10594] {aka HPRP8, PRP8, PRPC8, RP13, SNRNP220}, TXNL4A (thioredoxin like 4A) [NCBI Gene 10907] {aka BMKS, DIB1, DIM1, SNRNP15, TXNL4, U5-15kD}, SNRNP200 (small nuclear ribonucleoprotein U5 subunit 200) [NCBI Gene 23020] {aka ASCC3L1, BRR2, HELIC2, RP33, U5-200KD}, EFTUD2 (elongation factor Tu GTP binding domain containing 2) [NCBI Gene 9343] {aka MFDGA, MFDM, SNRNP116, Snrp116, Snu114, U5-116KD}
- **Diseases:** craniofacial malformations (MESH:D019465), retinitis pigmentosa (MESH:D012174)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

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## References

68 references — full list in the complete paper: https://tomesphere.com/paper/PMC12011746/full.md

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Source: https://tomesphere.com/paper/PMC12011746