# Co-incubation of Short Amphiphilic Peptides with Dicer Substrate RNAs Results in β-Sheet Fibrils for Enhanced Gene Silencing in Cancer Cells

**Authors:** Kshitij Gupta, Lorena Parlea, Mathias Viard, Katelyn Smith, Anu Puri, Joseph T. Bergman, Taejin Kim, Bruce A. Shapiro

PMC · DOI: 10.59566/isrnn.2024.0101061 · RNA nanomed · 2025-04-18

## TL;DR

Short peptides and RNA form fibrils that help deliver RNA into cancer cells, improving gene silencing without using viruses.

## Contribution

Short RNAs can induce β-sheet fibril formation in peptides, enabling non-viral RNA delivery into cancer cells.

## Key findings

- Peptides and RNA self-assemble into β-sheet fibrils that transport RNA across cell membranes.
- Modifying peptide sequences changes how they bind RNA and affect membrane transport.
- Dicer substrate RNAs can act as non-viral delivery vectors for RNA in cancer cells.

## Abstract

RNA can interact with positively charged, amphiphilic peptides to cooperatively assemble into fibrils that enable RNA transport across cancer cellular membranes. RNA decreases the folding energy barrier imposed by the electrostatic repulsion between these charged peptides, thus partaking in RNA-peptide self-assembly along particular pathways in the energy landscape. Specific amphiphilic peptides capable of protecting and transporting RNA across a membrane have Type II’ β-turn hairpin forming motifs in their structures, which aids self-assembly into β-sheet fibrils. We employed a set of such cationic, amphiphilic peptides that have random coiled structures in the absence of folding stimuli, to characterize the (peptides):(RNA) assembly. We subjected these complexes to extensive biophysical characterization in vitro and in cell culture. We show that short RNAs (such as Dicer substrate RNAs) can lead these peptides to self-assemble into β-sheet fibrils that have RNA transport capabilities and can act as non-viral delivery vectors for RNA. Modulation in the peptide sequence implicitly alters the way they bind RNA and influence the peptides’ ability to transport nucleic acids across membranes.

## Linked entities

- **Proteins:** DICER1 (dicer 1, ribonuclease III)
- **Diseases:** cancer (MONDO:0004992)

## Full-text entities

- **Genes:** DICER1 (dicer 1, ribonuclease III) [NCBI Gene 23405] {aka DCR1, Dicer, Dicer1e, GLOW, HERNA, K12H4.8-LIKE}
- **Diseases:** Cancer (MESH:D009369)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12007892/full.md

## References

55 references — full list in the complete paper: https://tomesphere.com/paper/PMC12007892/full.md

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Source: https://tomesphere.com/paper/PMC12007892