# Mycobactin and clofazimine activity are negatively correlated in mycobacteria

**Authors:** Martin I. Voskuil, Christopher R. Covey, Matthew J. Reichlen, Anushila Chatterjee, Breck A. Duerkop, Surendra Dawadi, Courtney C. Aldrich, Alexander Aaring

PMC · DOI: 10.3389/fmicb.2025.1539139 · Frontiers in Microbiology · 2025-04-03

## TL;DR

The study shows that clofazimine's effectiveness against mycobacteria is reduced when mycobactin levels are high, suggesting a link between iron homeostasis and drug activity.

## Contribution

The paper reveals a novel negative correlation between mycobactin levels and clofazimine activity, linking drug efficacy to iron regulation mechanisms in mycobacteria.

## Key findings

- Clofazimine exposure induces gene expression patterns resembling low iron conditions in Mycobacterium tuberculosis.
- Mycobactin levels correlate with decreased clofazimine bactericidal activity, suggesting a role in iron homeostasis.
- Iron efflux is observed during clofazimine treatment, potentially contributing to its anti-mycobacterial effects.

## Abstract

Clofazimine (CFZ) is an anti-leprosy drug shown to improve outcomes in treatment of multidrug-resistant tuberculosis (TB) and nontuberculous mycobacterial infections. Studies in Mycobacterium tuberculosis and Mycobacterium avium identified CFZ resistance mutations in the gene that encodes the MmpR5/MmpT5 regulator, which increase expression of the mycobactin (MBT) transporter, MmpS5/L5. We found exposure of M. tuberculosis to CFZ induced a pattern of gene expression that mirrored low iron conditions, including strong induction of genes that encode MBT synthesis and transport. We identified a corresponding increase in MBT levels indicating a role in iron homeostasis in CFZ activity. CFZ bactericidal activity against both Mycobacterium smegmatis and M. tuberculosis was increased in high iron conditions in which MTB synthesis and transport was limited. We show the presence of MBT correlated with decreased CFZ killing activity while inhibition of MBT synthesis increased killing. Considerable iron efflux was observed during CFZ treatment indicating iron loss may be a feature of CFZ anti-mycobacterial activity. CFZ solubility studies and CFZ-mediated reduction of free iron indicate a potential redox interaction between CFZ and iron. MBT or MBT flux across the cell envelope appears to block CFZ killing in M. smegmatis and potentially M. tuberculosis. The specific mechanism by which MBT inhibits CFZ lethality remains unclear but may involve, increased iron acquisition, the MmpS5/L5 MBT efflux pump, or the CFZ subcellular localization altered by the redox state and solubility of CFZ. CFZ has thus far been proven most effective against Mycobacterium leprae, which lacks MBT, indicating an understanding of the complex interaction of CFZ with iron acquisition systems may suggest more effective therapeutic applications.

## Linked entities

- **Genes:** mmpR5 (siderophore transport transcriptional regulator MmpR5) [NCBI Gene 45424640], mmpS5 (membrane protein MmpS5) [NCBI Gene 888233], RPL5 (ribosomal protein L5) [NCBI Gene 6125]
- **Proteins:** mmpR5 (siderophore transport transcriptional regulator MmpR5), mmpS5 (membrane protein MmpS5), RPL5 (ribosomal protein L5)
- **Chemicals:** clofazimine (PubChem CID 2794), mycobactin (PubChem CID 3083702), iron (PubChem CID 23925)
- **Diseases:** tuberculosis (MONDO:0018076), leprosy (MONDO:0005124)
- **Species:** Mycobacterium tuberculosis (taxon 1773), Mycobacterium avium (taxon 1764), Mycobacterium leprae (taxon 1769)

## Full-text entities

- **Diseases:** leprosy (MESH:D007918), multidrug-resistant tuberculosis (MESH:D018088), TB (MESH:D014376), nontuberculous mycobacterial infections (MESH:D009165)
- **Chemicals:** Mycobactin (MESH:C018608), iron (MESH:D007501), CFZ (MESH:D002991)
- **Species:** Mycobacterium tuberculosis (species) [taxon 1773], Mycobacterium avium (species) [taxon 1764], Mycobacterium leprae (species) [taxon 1769], Mycolicibacterium smegmatis (species) [taxon 1772]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC12003420/full.md

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC12003420/full.md

## References

56 references — full list in the complete paper: https://tomesphere.com/paper/PMC12003420/full.md

---
Source: https://tomesphere.com/paper/PMC12003420