# Increased amounts of cell-free DNA released from a culture with a high content of cancer stem cells

**Authors:** Ileana J. Fernández-Domínguez, Enrique Pérez-Cárdenas, Lucia Taja-Chayeb, Talia Wegman-Ostrosky, Claudia H. S. Caro-Sánchez, Alejandro Zentella-Dehesa, Alfonso Dueñas-González, Horacio López-Basabe, Rocío Morales-Bárcenas, Catalina Trejo-Becerril

PMC · DOI: 10.3389/fcell.2025.1499936 · Frontiers in Cell and Developmental Biology · 2025-03-28

## TL;DR

This study shows that cancer stem cells release more cell-free DNA, which can influence cell transformation and may serve as a potential biomarker for cancer.

## Contribution

This is the first study to demonstrate a direct link between cancer stem cell proportions and increased cfDNA release with transformation potential.

## Key findings

- Cultures with cancer stem cells released more cfDNA with a distinct fragment profile.
- cfDNA from different cell types influenced the transformation of NIH3T3 cells.
- Cancer stem cells and their environment affect cfDNA quantity and transformation potential.

## Abstract

The study and characterization of cell-free DNA (cfDNA) has gained significant importance due to its clinical applications as a diagnostic and prognostic marker. However, it remains unclear whether all cell populations within a tumor or culture contribute equally to its release. This pioneering research analyzes the contribution of cancer stem cells (CSCs) in colon cancer cell lines to the amount of cfDNA released and its role in cellular transformation.

The CSC population derived from the SW480 colon cancer cell line was enriched using a non-adhesive culture system to assess the quantity and electrophoretic profile of the released cfDNA. Subsequently, in vitro transformation assays were conducted to compare the transforming capacity of the cfDNA obtained from enriched cultures with that from non-enriched cultures. Group differences were analyzed using analysis of variance (ANOVA), followed by post hoc interpretation with Tukey’s test.

Our study revealed that cultures with CSCs released greater amounts of cfDNA, displaying a distinct fragment profile. Additionally, cfDNA from different cellular origins influenced the transformation characteristics of NIH3T3 cells. This is the first demonstration of a link between CSC proportions and cfDNA release, suggesting that CSCs and microenvironmental conditions can affect cfDNA quantity and its potential to induce transformation.

These findings highlight the importance of cfDNA in carcinogenesis and its potential as a biomarker and therapeutic target, especially given the role of CSCs in drug resistance and tumor aggressiveness.

## Linked entities

- **Diseases:** colon cancer (MONDO:0002032)
- **Species:** Homo sapiens (taxon 9606), Mus musculus (taxon 10090)

## Full-text entities

- **Diseases:** colon cancer (MESH:D015179), carcinogenesis (MESH:D063646), cancer (MESH:D009369)
- **Cell lines:** SW480 — Homo sapiens (Human), Colon adenocarcinoma, Cancer cell line (CVCL_0546), NIH3T3 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0594)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11985834/full.md

## References

83 references — full list in the complete paper: https://tomesphere.com/paper/PMC11985834/full.md

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Source: https://tomesphere.com/paper/PMC11985834