# Lymphoproliferation and hyper-IgM as the first manifestation of activated phosphoinositide 3-kinase δ syndrome: A case report

**Authors:** Mónica Fernandes-Pineda,, Andrés F. Zea-Vera

PMC · DOI: 10.7705/biomedica.7436 · Biomédica · 2024-12-30

## TL;DR

A 15-year-old male presented with lymphoproliferation and hyper-IgM, later diagnosed with a rare immune disorder caused by a mutation in the PIK3R1 gene.

## Contribution

This case report highlights a novel splice site mutation in PIK3R1 presenting as hyper-IgM syndrome.

## Key findings

- A heterozygous splice site mutation in PIK3R1 was identified in a patient with lymphoproliferation and hyper-IgM.
- The mutation was located in a well-established hotspot of the PIK3R1 gene.
- The case underscores the importance of genetic testing for accurate diagnosis of immune disorders.

## Abstract

Activated phosphoinositide 3-kinase δ syndrome is an inborn error of immunity due to mutations within the genes responsible for encoding PI3Kδ subunits. This syndrome results in an excessive activation of the phosphoinositide 3-kinase signaling pathway. Gain- of-function mutations in the gene PIK3R1 (encoding p85α, p55α, and p50α) lead to the development of the activated PI3K δ syndrome. Notably, the clinical presentations of this syndrome often closely resemble those of other primary immunodeficiencies.

We present a case involving a 15-year-old male who displayed an immunological phenotype that bore a striking resemblance to hyper-IgM syndrome. Whole exome sequencing was undertaken to pinpoint the underlying genetic mutation.

Our investigation successfully identified a heterozygous splice site mutation previously reported within the well-established hotspot of the PIK3R1 gene (GRCh37, c.1425+1 G>T). The diverse spectrum of inborn errors of immunity underscores the pivotal role of identifying gene mutations, particularly in patients presenting clinical manifestations spanning autoimmune disorders, lymphoproliferative conditions, and antibody deficiencies. Such precise genetic diagnoses hold significant potential for improving patient care and management.

## Linked entities

- **Genes:** PIK3R1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 5295]
- **Proteins:** Pi3K21B (phosphatidylinositol 3-kinase regulatory subunit alpha)
- **Diseases:** hyper-IgM syndrome (MONDO:0003947)

## Full-text entities

- **Genes:** PIK3CD (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit delta) [NCBI Gene 5293] {aka APDS, IMD14, IMD14A, IMD14B, P110DELTA, PI3K}, PIK3R1 (phosphoinositide-3-kinase regulatory subunit 1) [NCBI Gene 5295] {aka AGM7, GRB1, IMD36, p85, p85-ALPHA, p85alpha}
- **Diseases:** lymphoproliferative conditions (MESH:D008232), hyper-IgM (MESH:D053306), antibody deficiencies (MESH:D007153), PI3K delta (MESH:C585640), inborn error of immunity (MESH:D007154), primary immunodeficiencies (MESH:D000081207), Activated phosphoinositide 3-kinase delta syndrome (OMIM:615513), autoimmune disorders (MESH:D001327)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** c.1425+1 G>T

## Full text

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## Figures

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## References

18 references — full list in the complete paper: https://tomesphere.com/paper/PMC11949422/full.md

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Source: https://tomesphere.com/paper/PMC11949422