# Cell Cycle-Based Molecular Features via Synthetic Lethality and Non-Coding RNA Interactions in Cancer

**Authors:** Shizheng Xiong, Jiaming Jin, Xinmiao Zhao, Yang Zhao, Zhiheng He, Haochuan Guo, Chengjun Gong, Jiafeng Yu, Li Guo, Tingming Liang

PMC · DOI: 10.3390/genes16030310 · Genes · 2025-03-05

## TL;DR

This study explores how cell cycle features and synthetic lethality can classify cancer subtypes and identify new drug targets.

## Contribution

The novel contribution is identifying cell cycle-based molecular subtypes and synthetic lethal interactions for cancer therapy.

## Key findings

- Cell cycle-based subtypes in kidney cancers show unique immune profiles.
- Synthetic lethal interactions in the cell cycle pathway reveal potential drug targets.
- Non-coding RNAs like miRNAs and lncRNAs influence the cell cycle through genetic interactions.

## Abstract

Background: The cell cycle, a critical and intricate biological process, comprises various phases, and its dysregulation plays a pivotal role in tumorigenesis and metastasis. The exploration of cell cycle-based molecular subtypes across pan-cancers, along with the application of synthetic lethality concepts, holds promise for advancing cancer therapies. Methods: A pan-cancer analysis was conducted to assess the cell cycle serves as a reliable signature for classifying molecular subtypes and to understand the potential clinical application of genes as potential drug targets based on synthetic lethality. Results: Molecular subtypes derived from cell cycle features in certain cancers, particularly kidney-related malignancies, exhibited distinct immune characteristics. Synthetic lethal interactions within the cell cycle pathway were common, with significant genetic interactions further identifying potential drug targets through the exploitation of genetic relationships with key driver genes. Additionally, miRNAs and lncRNAs may influence the cell cycle through miRNA:mRNA interactions and ceRNA networks, thereby enriching the genetic interaction landscape. Conclusions: These findings suggest that the cell cycle pathway could serve as a promising molecular subtype signature to enhance cancer prognostication and offer potential targets for anticancer drug development through synthetic lethality.

## Full-text entities

- **Diseases:** metastasis (MESH:D009362), tumorigenesis (MESH:D063646), Cancer (MESH:D009369), kidney-related malignancies (MESH:D007680)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11941865/full.md

## References

71 references — full list in the complete paper: https://tomesphere.com/paper/PMC11941865/full.md

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Source: https://tomesphere.com/paper/PMC11941865