# Diagnostic Implications of NGS-Based Molecular Profiling in Mature B-Cell Lymphomas with Potential Bone Marrow Involvement

**Authors:** Bernhard Strasser, Sebastian Mustafa, Josef Seier, Erich Wimmer, Josef Tomasits

PMC · DOI: 10.3390/diagnostics15060727 · Diagnostics · 2025-03-14

## TL;DR

This study shows that next-generation sequencing improves the diagnosis of B-cell lymphomas, especially when traditional methods are unclear.

## Contribution

The study validates NGS as a reliable and complementary diagnostic tool for mature B-cell lymphomas with bone marrow involvement.

## Key findings

- NGS achieved 100% sensitivity and specificity with high reproducibility.
- NGS reliably detected WHO-classified markers like BRAF, MYD88, and CXCR4 mutations.
- NGS outperformed cytogenetics in cases with limited morphological assessment (70% vs. 30%).

## Abstract

Background: Methods such as cytogenetics and immunocytology/immunohistology provide essential diagnostic insights but may be limited in ambiguous cases of mature B-cell lymphoma. Next-generation sequencing (NGS) has emerged as a potential tool to improve diagnostics. Methods: We validated the analytical performance of a lymphoid customized NGS panel. Clinical validation was conducted in 226 patients with suspected mature B-cell lymphoma with potential bone marrow involvement across multiple clinically relevant scenarios. Results: NGS (1) achieved 100% sensitivity and specificity with high reproducibility (r = 0.995), confirming its analytical performance. (2) It reliably detected WHO-classified markers, including BRAF mutations in all hairy cell leukemia cases, MYD88/CXCR4 mutations in lymphoplasmacytic lymphoma, and absence of BRAF mutations in splenic B-cell lymphoma with prominent nucleoli. (3) In lymphoma exclusion diagnostics, NGS identified mutations in previously undiagnosed cases, including a BCORL1 mutation leading to reclassification as marginal zone lymphoma. (4) Among 105 confirmed lymphomas, 65% harbored mutations, with detection rates highest in HCL and LPL (100%) and CLL (62%), while follicular lymphoma showed no detectable mutations. (5) In cases with non-interpretable cytogenetics, NGS detected pathogenic variants in 61% of patients, compensating for inconclusive findings. (6) In cases with limited morphological assessment, NGS identified relevant mutations in 70%, outperforming cytogenetics (30%; p = 0.0256, OR = 5.44). Conclusions: NGS enhances the diagnostic accuracy of mature B-cell lymphomas by complementing traditional methods, refining WHO-classified subtypes, and improving detection in cases with inconclusive cytogenetics or morphology. NGS may reduce the need for unnecessary bone marrow re-punctures by providing additional information in ambiguous cases.

## Linked entities

- **Genes:** BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673], MYD88 (MYD88 innate immune signal transduction adaptor) [NCBI Gene 4615], CXCR4 (C-X-C motif chemokine receptor 4) [NCBI Gene 7852], BCORL1 (BCL6 corepressor like 1) [NCBI Gene 63035]
- **Diseases:** hairy cell leukemia (MONDO:0018935), lymphoplasmacytic lymphoma (MONDO:0000432), marginal zone lymphoma (MONDO:0017604), chronic lymphocytic leukemia (MONDO:0004948), follicular lymphoma (MONDO:0018906)

## Full-text entities

- **Genes:** CXCR4 (C-X-C motif chemokine receptor 4) [NCBI Gene 7852] {aka CD184, D2S201E, FB22, HM89, HSY3RR, LCR1}, MYD88 (MYD88 innate immune signal transduction adaptor) [NCBI Gene 4615] {aka IMD68, MYD88D, WM1}, BCORL1 (BCL6 corepressor like 1) [NCBI Gene 63035] {aka BCoR-L1, CXorf10, SHUVER}, BRAF (B-Raf proto-oncogene, serine/threonine kinase) [NCBI Gene 673] {aka B-RAF1, B-raf, BRAF-1, BRAF1, NS7, RAFB1}
- **Diseases:** LPL (MESH:D008072), CLL (MESH:D015451), hairy cell leukemia (MESH:D007943), follicular lymphoma (MESH:D008224), B-cell lymphoma (MESH:D016393), lymphoma (MESH:D008223), marginal zone lymphoma (MESH:D018442)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC11941227/full.md

## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11941227/full.md

## References

32 references — full list in the complete paper: https://tomesphere.com/paper/PMC11941227/full.md

---
Source: https://tomesphere.com/paper/PMC11941227