# Quorum sensing regulators and non-ribosomal peptide synthetases govern antibacterial secretions in Xenorhabdus szentirmaii

**Authors:** Ritisha Dey, Domonique Olivia Valle, Abhijit Chakraborty, Kimberly A. Mayer, Jagadeesh Kumar Uppala, Anish Chakraborty, Shama Mirza, Troy Skwor, Steven Forst, Madhusudan Dey

PMC · DOI: 10.3389/fmicb.2025.1560663 · 2025-03-12

## TL;DR

This paper explores how the bacterium Xenorhabdus szentirmaii uses quorum sensing and specific enzymes to produce antibiotics, offering new ways to combat antibiotic resistance.

## Contribution

The study identifies quorum sensing regulators and NRPS operons in X. szentirmaii that govern antibiotic secretion.

## Key findings

- X. szentirmaii produces high antibiotic activity during stationary phase against resistant pathogens.
- The bacterium has 17 NRPS/PKS operons, including those for Pax peptide and Fabclavine.
- Quorum sensing gene lsrF is highly expressed during stationary phase, linking QS to antibiotic synthesis.

## Abstract

The decades-long gap in antibiotic discovery has led to a significant health crisis due to antimicrobial resistance (AMR). The bacterial genus Xenorhabdus, which forms symbiotic relationships with the soil nematode Steinernema, are known to secrete a variety of antimicrobial compounds with potential effectiveness against AMR. These antimicrobial compounds are primarily bio-synthesized by non-ribosomal peptide synthetases (NRPS) and polyketide synthase (PKS) genes. In this study, we report that X. szentirmaii produces high levels of antibiotic activity during the stationary phase against diverse bacteria including known antibiotic resistant pathogens. It possesses 17 operons to encode predicted NRPS and PKS enzymes, designated as ste1 through ste17. The ste15-ste16 and ste17 operons are predicted to produce the known antibiotics Pax peptide and Fabclavine, respectively. Additionally, the newly identified operons ste3, ste4, ste5, ste8, ste9, and ste14 consist of single genes, each containing two or more NRPS genes. The ste13 operon harbors two NRPS genes, while the ste7 and ste12 operons contain three NRPS genes each. Further, RNA-seq analysis showed that lsrF that encodes a quorum sensing autoinducer-2 (AI-2) thiolase was expressed at high levels during stationary phase. These findings provide evidence that X. szentirmaii uses quorum sensing (QS) to synchronize the expression of multiple NRPS and PKS enzymes responsible for synthesizing various antimicrobial compounds. This study underscores the potential to leverage these regulatory insights for maximizing commercial applications of novel antibiotics combating AMR, as well as broader industrial uses.

## Linked entities

- **Genes:** lsrF (autoinducer-2 aldolase) [NCBI Gene 917321], STE1 (sterol 1) [NCBI Gene 820679], STE2 (alpha-factor pheromone receptor STE2) [NCBI Gene 850518], STE3 (Ste3p) [NCBI Gene 853677], STE4 (G protein subunit beta) [NCBI Gene 854387], STE5 (Ste5p) [NCBI Gene 851680], STE6 (ATP-binding cassette a-factor transporter STE6) [NCBI Gene 853671], STE7 (mitogen-activated protein kinase kinase STE7) [NCBI Gene 851396], SIR3 (chromatin-silencing protein SIR3) [NCBI Gene 851163], SIR4 (chromatin-silencing protein SIR4) [NCBI Gene 851813], STE11 (mitogen-activated protein kinase kinase kinase STE11) [NCBI Gene 851076], STE12 (homeodomain family transcription factor STE12) [NCBI Gene 856484], STE13 (Ste13p) [NCBI Gene 854394], ste14 (isoprenylcysteine carboxylmethyltransferase ste14) [NCBI Gene 663323], RAM1 (protein farnesyltransferase) [NCBI Gene 851468]
- **Species:** Xenorhabdus szentirmaii (taxon 290112), Steinernema (taxon 34507)

## Full-text entities

- **Species:** Steinernema (genus) [taxon 34507], Xenorhabdus (genus) [taxon 626], Xenorhabdus szentirmaii (species) [taxon 290112]

## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11936946/full.md

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Source: https://tomesphere.com/paper/PMC11936946