# Case Report: Area of focus clinical presentation and KMT2D gene mutation at the c.15535C>T site in a case of Kabuki syndrome

**Authors:** Wen Li, Mengjie Lin, Jinwei Dao, Li Shi, Wei Yi, Jia Lei, Yaxian Song, Jiaolou Dong, Meiwei Zhao, Yushan Xu, Lulu Chen

PMC · DOI: 10.3389/fgene.2025.1523228 · Frontiers in Genetics · 2025-03-07

## TL;DR

This case report describes a 16-year-old male with Kabuki syndrome caused by a new mutation in the KMT2D gene, highlighting the clinical features and genetic findings.

## Contribution

The report presents a novel de novo KMT2D gene mutation (c.15535C>T) associated with Kabuki syndrome type I in a male patient.

## Key findings

- The patient exhibited characteristic facial features and intellectual disability consistent with Kabuki syndrome.
- A de novo heterozygous missense mutation (c.15535C>T) in the KMT2D gene was identified through molecular genetic testing.
- The patient also showed bilateral breast enlargement and speech-related impairments.

## Abstract

Kabuki syndrome (KS) is a rare autosomal dominant genetic disorder. The full understanding of KS remains elusive due to the heterogeneity of gene mutations, clinical phenotypes, and the associations and mechanisms linking genotypes to phenotypes. This study reports on a 16-year-old male patient diagnosed with type I Kabuki syndrome following the identification of a de novo mutation, c.15535C>T (p.Arg5179Cys), in the KMT2D gene.

A 16-year-old male presented with bilateral breast enlargement persisting for over 1 month. Historically, the patient exhibited intellectual disability. Both parents are healthy with no similar family history. The patient’s father had a history of heroin use for 8 years prior to the patient’s birth. On examination, the patient had unclear speech and slow speech rate, with diminished reading comprehension and calculation abilities. Characteristic facial features of KS were noted. Breast development was observed (Tanner stage II on the right and III on the left), with pain upon deep palpation of the left nipple. Molecular genetic testing identified a heterozygous missense mutation, c.15535C>T (p.Arg5179Cys), in theKMT2Dgene, confirming the diagnosis of type I Kabuki syndrome.

KS is characterized by distinctive facial features: arched eyebrows, eversion of the eyelids, long palpebral fissures, a short nasal septum, a flat nasal tip, auricular deformities, a small mandible, a high palatal arch, or cleft palate. The patient exhibited a heterozygous missense mutation in the coding region of the KMT2D gene, identified as a de novo mutation. Currently, KS management primarily involves symptomatic and rehabilitative therapies.

## Linked entities

- **Genes:** KMT2D (lysine methyltransferase 2D) [NCBI Gene 8085]
- **Diseases:** Kabuki syndrome (MONDO:0016512), intellectual disability (MONDO:0001071)

## Full-text entities

- **Genes:** KMT2D (lysine methyltransferase 2D) [NCBI Gene 8085] {aka AAD10, ALR, BCAHH, CAGL114, KABUK1, KMS}
- **Diseases:** cleft palate (MESH:D002972), intellectual disability (MESH:D008607), autosomal dominant genetic disorder (MESH:D030342), auricular deformities (MESH:D004428), pain (MESH:D010146), KS (MESH:C537705)
- **Chemicals:** heroin (MESH:D003932)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** p.Arg5179Cys

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11926138/full.md

## References

16 references — full list in the complete paper: https://tomesphere.com/paper/PMC11926138/full.md

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Source: https://tomesphere.com/paper/PMC11926138