# Anti-lymphoma peptide is inspired by mapping a sequence of four amino acids of KRAI motif as nuclear localization signal of Crlz-1

**Authors:** Joo Hyun Pi, Seung Young Choi, Sung-Kyun Park, Junghyun Lim, Chang Joong Kang

PMC · DOI: 10.1016/j.omton.2025.200953 · Molecular Therapy Oncology · 2025-02-20

## TL;DR

A peptide inspired by a four-amino-acid sequence in Crlz-1 inhibits lymphoma cell growth by disrupting a key gene regulatory pathway.

## Contribution

A novel anti-lymphoma peptide is developed based on the KRAI motif of Crlz-1's nuclear localization signal.

## Key findings

- The KRAI peptide blocks Crlz-1 nuclear movement, disrupting the CBFβ and Bcl-6 pathway.
- The peptide inhibits proliferation of lymphoma cells and reduces rRNA production.
- The peptide shows cell-membrane permeability and anti-tumor effects in mice.

## Abstract

Peptides of Crlz-1 nuclear localization signal as mapped to be a short KRAI sequence inhibited the proliferation of germinal center-derived Ramos cells from Burkitt’s lymphoma patient. This anti-proliferative effect was mechanistically explained by a cascade of the block of Crlz-1 nuclear movement and consequential failure of CBFβ nuclear mobilization, resulting in the absence of bound Runx/CBFβ heterodimer on the enhancer-promoter of the Bcl-6 GC master gene. As a consequence of this heterodimer absence, the Bcl-6 expression was abolished, leading to the down-regulation of cyclins D1-D3 and the up-regulation of IRF-4, Blimp-1, and IgJ genes. Furthermore, this peptide decreased the production of rRNA in these cells, indicating that the nuclear Crlz-1 as a UTP-3 constituent of ribosomal small subunit processome might be necessary to regulate the biogenesis and/or processing of rRNA, and thereby produce ribosomes necessary for their rapid proliferation. Surprisingly, the KRAI motif peptides had an intrinsic cell-membrane permeability by themselves, and therefore their anti-proliferative and anti-tumor effects were also demonstrated in both the cultured cells and Ramos-xenografted mice just by adding them directly to the culture media or injecting them into tail veins. This definitely paved the prospective road to developing a novel anti-cancer peptide drug against the germinal center-derived B cell lymphoma.

Kang and colleagues report that the blockade of Crlz-1 nuclear movement by AKRAIT as its nuclear localization signal peptide causes the failure of Crlz-1-Runx/CBFβ-Bcl-6 axis cascade and thus the peptide has a significant anti-proliferative and anti-tumor efficacy against the germinal center-derived B cell lymphoma.

## Linked entities

- **Genes:** UTP3 (UTP3 small subunit processome component) [NCBI Gene 57050], CBFB (core-binding factor subunit beta) [NCBI Gene 865], LOC5504767 (runt-related transcription factor 3) [NCBI Gene 5504767], BCL6 (BCL6 transcription repressor) [NCBI Gene 604], IRF4 (interferon regulatory factor 4) [NCBI Gene 3662], PRDM1 (PR/SET domain 1) [NCBI Gene 639], JCHAIN (joining chain of multimeric IgA and IgM) [NCBI Gene 3512], UTP3 (UTP3 small subunit processome component) [NCBI Gene 57050]
- **Diseases:** Burkitt’s lymphoma (MONDO:0007243)

## Full-text entities

- **Genes:** JCHAIN (joining chain of multimeric IgA and IgM) [NCBI Gene 3512] {aka IGCJ, IGJ, JCH}, BCL6 (BCL6 transcription repressor) [NCBI Gene 604] {aka BCL5, BCL6A, LAZ3, ZBTB27, ZNF51}, IRF4 (interferon regulatory factor 4) [NCBI Gene 3662] {aka IMD131, LSIRF, MUM1, NF-EM5, SHEP8}, UTP3 (UTP3 small subunit processome component) [NCBI Gene 57050] {aka CRL1, CRLZ1, SAS10}, PRDM1 (PR/SET domain 1) [NCBI Gene 639] {aka BLIMP-1, BLIMP1, PRDI-BF1}, CBFB (core-binding factor subunit beta) [NCBI Gene 865] {aka CLCD2, PEBP2B}
- **Diseases:** cancer (MESH:D009369), Burkitt's lymphoma (MESH:D002051), B cell lymphoma (MESH:D016393)
- **Species:** Homo sapiens (human, species) [taxon 9606], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** Ramos- — Homo sapiens (Human), Burkitt lymphoma, Cancer cell line (CVCL_0597)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11906403/full.md

## References

46 references — full list in the complete paper: https://tomesphere.com/paper/PMC11906403/full.md

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Source: https://tomesphere.com/paper/PMC11906403