# Genetic Variants in Genes Related to Lung Function and Interstitial Lung Diseases Are Associated with Worse Outcomes in Severe COVID-19 and Lung Performance in the Post-COVID-19 Condition

**Authors:** Ingrid Fricke-Galindo, Salvador García-Carmona, Brandon Bautista-Becerril, Gloria Pérez-Rubio, Ivette Buendia-Roldan, Leslie Chávez-Galán, Karol J. Nava-Quiroz, Jesús Alanis-Ponce, Juan M. Reséndiz-Hernández, Esther Blanco-Aguilar, Jessica I. Erives-Sedano, Yashohara Méndez-Velasco, Grecia E. Osuna-Espinoza, Fidel Salvador-Hernández, Rubén Segura-Castañeda, Uriel N. Solano-Candia, Ramcés Falfán-Valencia

PMC · DOI: 10.3390/ijms26052046 · International Journal of Molecular Sciences · 2025-02-26

## TL;DR

This study finds that genetic variants linked to lung function and interstitial lung disease are associated with worse outcomes in severe COVID-19 and lung performance after recovery.

## Contribution

The study identifies specific genetic variants associated with severe COVID-19 outcomes and post-COVID-19 lung function.

## Key findings

- TERT rs2736100 and THSD4 rs872471 variants are linked to ARDS severity in COVID-19.
- FAM13A rs2609255 is related to post-COVID-19 pulmonary function.
- Genetic variants show differential epistasis and correlation in disease outcomes.

## Abstract

Genetic variants related to susceptibility to chronic respiratory conditions such as interstitial lung disease (ILD) could share critical pathways in the pathogenesis of COVID-19 and be implicated in COVID-19 outcomes and post-COVID-19. We aimed to identify the participation of genetic variants in lung function and ILD genes in severe COVID-19 outcomes and post-COVID-19 condition. We studied 936 hospitalized patients with COVID-19. The requirement of invasive mechanical ventilation (IMV) and the acute respiratory distress syndrome (ARDS) classification were considered. The mortality was assessed as the in-hospital death. The post-COVID-19 group included 102 patients evaluated for pulmonary function tests four times during the year after discharge. Five variants (FAM13A rs2609255, DSP rs2076295, TOLLIP rs111521887, TERT rs2736100, and THSD4 rs872471) were genotyped using TaqMan assays. A multifactor dimensionality reduction method (MDR) was performed for epistasis estimation. The TERT rs2736100 and THSD4 rs872471 variants were associated with differential risk for ARDS severity (moderate vs. severe, CC + CA, p = 0.044, OR = 0.66, 95% CI = 0.44–0.99; and GG p = 0.034, OR = 2.22, 95% CI = 1.04–4.72, respectively). These variants and FAM13A rs2609255 were also related to pulmonary function post-COVID-19. The MDR analysis showed differential epistasis and correlation of the genetic variants included in this study. The well-known variants in recognized genes related to pulmonary function worsening and interstitial disorders are related to the severity and mortality of COVID-19 and lung performance in the post-COVID-19 condition.

## Linked entities

- **Genes:** FAM13A (family with sequence similarity 13 member A) [NCBI Gene 10144], DSP (desmoplakin) [NCBI Gene 1832], TOLLIP (toll interacting protein) [NCBI Gene 54472], TERT (telomerase reverse transcriptase) [NCBI Gene 7015], THSD4 (thrombospondin type 1 domain containing 4) [NCBI Gene 79875]
- **Diseases:** interstitial lung disease (MONDO:0015925), ARDS (MONDO:0006502), COVID-19 (MONDO:0100096)

## Full-text entities

- **Genes:** TOLLIP (toll interacting protein) [NCBI Gene 54472] {aka IL-1RAcPIP}, FAM13A (family with sequence similarity 13 member A) [NCBI Gene 10144] {aka ARHGAP48, FAM13A1}, TERT (telomerase reverse transcriptase) [NCBI Gene 7015] {aka CMM9, DKCA2, DKCB4, EST2, PFBMFT1, TCS1}, THSD4 (thrombospondin type 1 domain containing 4) [NCBI Gene 79875] {aka AAT12, ADAMTSL-6, ADAMTSL6, FVSY9334, PRO34005}, DSP (desmoplakin) [NCBI Gene 1832] {aka DCWHKTA, DP}
- **Diseases:** death (MESH:D003643), Severe (MESH:D045169), interstitial disorders (MESH:D065167), COVID-19 (MESH:D000086382), ILD (MESH:D017563), ARDS (MESH:D012128), conditions (MESH:D020763), Post-COVID-19 Condition (MESH:D000094024)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** rs111521887, rs2736100, rs872471, rs2609255, rs2076295

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11900979/full.md

## References

47 references — full list in the complete paper: https://tomesphere.com/paper/PMC11900979/full.md

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Source: https://tomesphere.com/paper/PMC11900979