# clustur: an R package for clustering features using sparse distance matrices

**Authors:** Gregory Johnson, Sarah L. Westcott, Patrick D. Schloss

PMC · DOI: 10.1128/mra.01238-24 · Microbiology Resource Announcements · 2025-01-30

## TL;DR

The clustur R package provides tools for clustering 16S rRNA gene sequences into OTUs using algorithms from mothur, making them available in R for broader use.

## Contribution

clustur introduces mothur's clustering algorithms into the R ecosystem, enabling easier integration and development within R.

## Key findings

- clustur implements de novo clustering algorithms from mothur for OTU assignment.
- The package enhances accessibility and integration of these algorithms within R.
- It supports broader application and further development in the R ecosystem.

## Abstract

The clustur R package implements the de novo clustering algorithms found in the mothur software package for assigning 16S rRNA gene sequences to operational taxonomic units (OTUs). Making these algorithms accessible through the R ecosystem will foster their further development, broader application, and integration within other R packages.

## Linked entities

- **Genes:** 16S rRNA (16S ribosomal RNA) [NCBI Gene 2597965]

## Full-text entities

- **Chemicals:** DOTUR (-)

## Full text

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## References

12 references — full list in the complete paper: https://tomesphere.com/paper/PMC11895476/full.md

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Source: https://tomesphere.com/paper/PMC11895476