# Characterization of the complete mitochondrial genome of Hynobius bambusicolus Wang, Othman, Qiu and Borzée, 2023 (Amphibia, Caudata, Hynobiidae) and its phylogenetic implications

**Authors:** Yanpin Huang, Helin Wang, Haoran Luo, Honghui Zhong, Qingxian Lin, Xiaoping Zhou

PMC · DOI: 10.1080/23802359.2025.2475845 · Mitochondrial DNA. Part B, Resources · 2025-03-10

## TL;DR

This paper reports the full mitochondrial genome of a newly discovered salamander species and its evolutionary placement.

## Contribution

The study provides the first complete mitochondrial genome sequence for Hynobius bambusicolus and its phylogenetic analysis.

## Key findings

- The mitogenome of H. bambusicolus is 16,406 bp long with typical mitochondrial gene content.
- Phylogenetic analysis shows H. bambusicolus is the basal branch in the Southern Chinese Hynobius clade.

## Abstract

Hynobius bambusicolus (Caudata, Hynobiidae) is a recently described species, identified in 2022, and is thus not widely known. In this study, we sequenced and annotated the complete mitogenome of H. bambusicolus. The resulting mitochondrial genome is 16,406 bp in length and comprises 13 protein-coding genes (PCGs), two ribosomal RNA genes (rRNA), 22 transfer RNA genes, and a non-coding region. The base composition of the mitogenome is 33.3% A, 32.1% T, 20.8% C, and 13.8% G. The phylogenetic trees indicated that H. bambusicolus is the basal branch within the Southern Chinese Hynobius clade.

## Linked entities

- **Species:** Hynobius bambusicolus (taxon 3014898)

## Full-text entities

- **Genes:** ND1 [NCBI Gene 4097859], COX2 [NCBI Gene 4097849], COX1 [NCBI Gene 4097848], ATP8 [NCBI Gene 4097850], ND6 [NCBI Gene 4097857], ND2 [NCBI Gene 4097847], ND4L [NCBI Gene 4097854], ND5 [NCBI Gene 4097856], ND3 [NCBI Gene 4097853], ATP6 [NCBI Gene 4097851], ND4 [NCBI Gene 4097855], CYTB [NCBI Gene 4097858], COX3 [NCBI Gene 4097852]
- **Chemicals:** Sodium Dodecyl Sulfate (MESH:D012967)
- **Species:** Pachyhynobius shangchengensis (Shangcheng salamander, species) [taxon 288317], Hynobius guabangshanensis (Guabangshan salamander, species) [taxon 412855], Hynobius chinensis (Chinese salamander, species) [taxon 288313], Hynobius maoershanensis (species) [taxon 429345], Hynobius yiwuensis (species) [taxon 244217]

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11894738/full.md

## References

27 references — full list in the complete paper: https://tomesphere.com/paper/PMC11894738/full.md

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Source: https://tomesphere.com/paper/PMC11894738