# Identification and validation of the common pathogenesis and hub biomarkers in Papillary thyroid carcinoma complicated by rheumatoid arthritis

**Authors:** Yingming Liu, Xiangjun Kong, Qianshu Sun, Tianxing Cui, Shengnan Xu, Chao Ding, Qi Zhao, Fırat Aşir, Fırat Aşir, Fırat Aşir

PMC · DOI: 10.1371/journal.pone.0317369 · PLOS One · 2025-03-10

## TL;DR

This study explores shared genetic and biological pathways between papillary thyroid cancer and rheumatoid arthritis to identify common biomarkers and mechanisms.

## Contribution

The study identifies 64 shared differentially expressed genes and key biomarkers linking papillary thyroid carcinoma and rheumatoid arthritis.

## Key findings

- Shared differentially expressed genes are enriched in immunity and signal transduction pathways.
- Key hub genes like CCR5, CD4, IL6, and CXCL10 are implicated in the shared pathogenesis of both diseases.
- Common genetic mechanisms suggest potential therapeutic targets for both conditions.

## Abstract

Papillary thyroid carcinoma coexisting with rheumatoid arthritis is frequently observed in clinical patients, yet its pathogenesis has not been fully elucidated. This investigation sought to further explore the molecular underpinnings of these two diseases.

Gene expression profiles for thyroid papillary carcinoma and rheumatoid arthritis patients were obtained from the Comprehensive Gene Expression Database (GEO). Following the discovery of shared differentially expressed genes (DEGs) between these two conditions, three separate analyses were conducted. These included functional annotation, the establishment of a protein‒protein interaction (PPI) network and module, and the identification of hub genes via coexpression analysis. The final step involved the validation of target genes via clinical specimens.

This study analyzed datasets from four GEO databases and identified 64 common DEGs. Functional enrichment analysis revealed that these genes are predominantly associated with pathways related to immunity and signal transduction. Protein‒protein interaction (PPI) network analysis revealed complex interactions among these differentially expressed genes and highlighted several genes that may play pivotal roles in shared pathological mechanisms, namely, CCR5, CD4, IL6, CXCL13, FOXM1, CXCL9, and CXCL10.

Our study highlights the shared pathogenesis between papillary thyroid cancer and rheumatoid arthritis. Shared pathways and crucial genes could offer novel perspectives for subsequent investigations into the mechanisms of these diseases.

## Linked entities

- **Genes:** CCR5 (C-C motif chemokine receptor 5) [NCBI Gene 1234], CD4 (CD4 molecule) [NCBI Gene 920], IL6 (interleukin 6) [NCBI Gene 3569], CXCL13 (C-X-C motif chemokine ligand 13) [NCBI Gene 10563], FOXM1 (forkhead box M1) [NCBI Gene 2305], CXCL9 (C-X-C motif chemokine ligand 9) [NCBI Gene 4283], CXCL10 (C-X-C motif chemokine ligand 10) [NCBI Gene 3627]
- **Diseases:** Papillary thyroid carcinoma (MONDO:0005075), rheumatoid arthritis (MONDO:0008383)

## Full-text entities

- **Genes:** CXCL10 (C-X-C motif chemokine ligand 10) [NCBI Gene 3627] {aka C7, IFI10, INP10, IP-10, SCYB10, crg-2}, CCR5 (C-C motif chemokine receptor 5) [NCBI Gene 1234] {aka CC-CKR-5, CCCKR5, CCR-5, CD195, CKR-5, CKR5}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, CXCL13 (C-X-C motif chemokine ligand 13) [NCBI Gene 10563] {aka ANGIE, ANGIE2, BCA-1, BCA1, BLC, BLR1L}, CD4 (CD4 molecule) [NCBI Gene 920] {aka CD4mut, IMD79, Leu-3, OKT4D, T4}, FOXM1 (forkhead box M1) [NCBI Gene 2305] {aka FKHL16, FOXM1A, FOXM1B, FOXM1C, HFH-11, HFH11}, CXCL9 (C-X-C motif chemokine ligand 9) [NCBI Gene 4283] {aka CMK, Humig, MIG, SCYB9, crg-10}
- **Diseases:** rheumatoid arthritis (MESH:D001172), Papillary thyroid carcinoma (MESH:D000077273)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

6 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11892850/full.md

## References

70 references — full list in the complete paper: https://tomesphere.com/paper/PMC11892850/full.md

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Source: https://tomesphere.com/paper/PMC11892850