# Rad5 and Ubc4 directly ubiquitinate PCNA at Lys164 in vitro

**Authors:** Yixiong Hu, Kaiyang Liu, Xue Bai, Pu Chen, Kai Zhang, Song Xiang

PMC · DOI: 10.1016/j.jbc.2025.108192 · 2025-01-16

## TL;DR

This study shows that Rad5 and Ubc4 directly ubiquitinate PCNA at Lys164, contributing to replication stress responses in yeast.

## Contribution

The study provides biochemical evidence that Rad5 and Ubc4 directly ubiquitinate PCNA at Lys164 in vitro.

## Key findings

- Rad5 and Ubc4 directly ubiquitinate PCNA in vitro.
- The reaction requires coordination of Rad5’s HIRAN and RING domains.
- Lys164 is a major ubiquitination site on PCNA in this reaction.

## Abstract

Ubiquitination of the proliferating cell nuclear antigen (PCNA) by the budding yeast protein Rad5 have important functions in replication stress responses. Rad5 together with the Ubc13–Mms2 complex attaches Lys63-linked ubiquitin chain to a highly conserved Lys164 residue in PCNA. The reaction requires prior PCNA monoubiquitination by the Rad6–Rad18 complex and signals for error-free DNA damage tolerance responses. Cellular studies suggested that Rad5 also cooperates with Ubc4 to catalyze PCNA ubiquitination in response to Okazaki fragment ligation defects, but biochemical evidence of this reaction is lacking. Here, we reconstituted this reaction and studied its biochemical properties. We found that Rad5 and Ubc4 directly ubiquitinate PCNA and the reaction requires a coordination of Rad5’s HIRAN and RING domains. Most interestingly, we found that the reaction ubiquitinates PCNA at multiple sites among which Lys164 is a major ubiquitination site. These findings suggest that Rad5 may contribute to replication stress responses through a novel mechanism by directly ubiquitinating Lys164 in PCNA.

## Linked entities

- **Genes:** SHPRH (SNF2 histone linker PHD RING helicase) [NCBI Gene 257218], UBE2D2 (ubiquitin conjugating enzyme E2 D2) [NCBI Gene 7322], RAD6 (E2 ubiquitin-conjugating protein RAD6) [NCBI Gene 852822], RAD18 (RAD18 E3 ubiquitin protein ligase) [NCBI Gene 56852], UBE2N (ubiquitin conjugating enzyme E2 N) [NCBI Gene 7334], UBE2V2 (ubiquitin conjugating enzyme E2 V2) [NCBI Gene 7336]
- **Proteins:** PCNA (proliferating cell nuclear antigen)

## Full-text entities

- **Genes:** UBC4 (E2 ubiquitin-conjugating protein UBC4) [NCBI Gene 852376], RAD6 (E2 ubiquitin-conjugating protein RAD6) [NCBI Gene 852822] {aka PSO8, UBC2}, POL30 (proliferating cell nuclear antigen) [NCBI Gene 852385], RAD18 (E3 ubiquitin-protein ligase RAD18) [NCBI Gene 850430], UBC13 (E2 ubiquitin-conjugating protein UBC13) [NCBI Gene 851666], MMS2 (E2 ubiquitin-conjugating protein MMS2) [NCBI Gene 852793], RAD5 (DNA helicase RAD5) [NCBI Gene 850719] {aka REV2, SNM2}
- **Species:** Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932]

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11871451/full.md

---
Source: https://tomesphere.com/paper/PMC11871451