# sqt-3(sc63) is an alternative CRISPR/Cas9 co-conversion marker in Caenorhabditis elegans

**Authors:** Isa Özdemir, Florian A. Steiner

PMC · DOI: 10.17912/micropub.biology.001467 · microPublication Biology · 2025-02-12

## TL;DR

This paper introduces a new genetic marker for tracking genome edits in C. elegans using CRISPR/Cas9.

## Contribution

The study introduces sqt-3(sc63) as a novel co-conversion marker on chromosome V for CRISPR/Cas9 genome editing in C. elegans.

## Key findings

- sqt-3(sc63) is a functional co-conversion marker for CRISPR/Cas9 genome editing in C. elegans.
- Its location on chromosome V makes it useful for editing targets on chromosome II.
- The conserved nature of sqt-3 suggests potential use in other nematode species.

## Abstract

The identification of genome-edited individuals by CRISPR/Cas9 in

Caenorhabditis elegans

often relies on the introduction of a second mutation with a visible phenotype. Popular targets for such co-conversion are

dpy-10

and

sqt-1

, both located on chromosome II. In this study, we introduce

sqt-3
(
sc63
)

V
as an alternative CRISPR/Cas9 co-conversion marker to facilitate the generation and detection of genome edits in

C. elegans

. Its location on chromosome V makes

sqt-3

a desirable alternative to

dpy-10

and

sqt-1

when editing targets on chromosome II. Additionally, the conserved nature of

sqt-3

provides a potential applicability in other nematode species.

## Linked entities

- **Genes:** dpy-10 (Cuticle collagen dpy-10) [NCBI Gene 36805042], KCNH2 (potassium voltage-gated channel subfamily H member 2) [NCBI Gene 3757], KCNJ2 (potassium inwardly rectifying channel subfamily J member 2) [NCBI Gene 3759]
- **Species:** Caenorhabditis elegans (taxon 6239)

## Full-text entities

- **Genes:** sqt-3 (Collagen triple helix repeat protein;Cuticle collagen 1) [NCBI Gene 179693], T14B4.19 (Tantalus domain-containing protein) [NCBI Gene 174106]
- **Species:** C. elegans [taxon 328850], Caenorhabditis elegans (species) [taxon 6239]

## Full text

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## Figures

1 figure with captions in the complete paper: https://tomesphere.com/paper/PMC11868924/full.md

## References

7 references — full list in the complete paper: https://tomesphere.com/paper/PMC11868924/full.md

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Source: https://tomesphere.com/paper/PMC11868924