# Getting PIKy with the lysosome membrane (again)

**Authors:** Alison D. Klein, Michael Overholtzer

PMC · DOI: 10.1080/27694127.2024.2412916 · Autophagy Reports · 2024-10-12

## TL;DR

This paper explores how the lipid kinase PIKfyve regulates microautophagy, a process that helps cells manage stress by degrading specific proteins in the lysosome.

## Contribution

The study reveals that PIKfyve functions downstream of ATG8 lipidation in CASM-induced microautophagy, distinct from TFEB activation.

## Key findings

- CASM-induced microautophagy requires PIKfyve activity for the turnover of ATG8s and lysosomal membrane proteins.
- TFEB induction occurs alongside microautophagy but is independent of PIKfyve activity.
- Stressors that activate CASM coordinate microautophagy with lysosome biogenesis through separable mechanisms.

## Abstract

Much is still unknown about microautophagy and its regulators. In our recent paper, one such regulator of microautophagy, the lipid kinase PIKfyve, is described. Previously it was found that treating cells with agents like lysomotropic drugs or proton ionophores, which alter lysosomal osmotic potential and pH, leads to a form of microautophagy that selectively degrades transmembrane proteins. Induction of this type of microautophagy is linked to a lysosomal stress response that involves the targeting of macroautophagy proteins, like ATG8s, to the lysosome membrane, through a mechanism called CASM. We found that CASM-induced microautophagy turns over ATG8s and other lysosomal membrane proteins, and requires PIKfyve activity functioning downstream of ATG8 lipidation. The lysosome biogenesis transcription factor TFEB is induced in parallel to microautophagy, in a CASM-dependent, but PIKfyve-independent manner. These findings demonstrate that stressors that engage CASM cause selective turnover by microautophagy that is coordinated with lysosome biogenesis through a mechanism that is separable through PIKfyve.

## Linked entities

- **Genes:** PIKFYVE (phosphoinositide kinase, FYVE-type zinc finger containing) [NCBI Gene 200576], GABARAPL2 (GABA type A receptor associated protein like 2) [NCBI Gene 11345], TFEB (transcription factor EB) [NCBI Gene 7942]

## Full-text entities

- **Genes:** GABARAPL1 (GABA type A receptor associated protein like 1) [NCBI Gene 23710] {aka APG8-LIKE, APG8L, ATG8, ATG8B, ATG8L, GEC1}, GABARAP (GABA type A receptor-associated protein) [NCBI Gene 11337] {aka ATG8A, GABARAP-a, MM46}, TFEB (transcription factor EB) [NCBI Gene 7942] {aka ALPHATFEB, BHLHE35, TCFEB}, FNIP1 (folliculin interacting protein 1) [NCBI Gene 96459] {aka IMD93}, MAP1LC3A (microtubule associated protein 1 light chain 3 alpha) [NCBI Gene 84557] {aka ATG8E, LC3, LC3A, MAP1ALC3, MAP1BLC3}, MCOLN1 (mucolipin TRP cation channel 1) [NCBI Gene 57192] {aka LECD, MG-2, ML1, ML4, MLIV, MST080}, LSM1 (LSM1 homolog, mRNA degradation associated) [NCBI Gene 27257] {aka CASM, FICUS, YJL124C}, PIKFYVE (phosphoinositide kinase, FYVE-type zinc finger containing) [NCBI Gene 200576] {aka FAB1, HEL37, PIP5K, PIP5K3, ZFYVE29}, ATG9A (autophagy related 9A) [NCBI Gene 79065] {aka APG9L1, MGD3208, mATG9}, FLCN (folliculin) [NCBI Gene 201163] {aka BHD, DENND8B, FLCL}, CTSS (cathepsin S) [NCBI Gene 1520], ATG16L1 (autophagy related 16 like 1) [NCBI Gene 55054] {aka APG16L, ATG16A, ATG16L, IBD10, WDR30}, FNIP2 (folliculin interacting protein 2) [NCBI Gene 57600] {aka FNIPL, MAPO1}, LAMP1 (lysosome associated membrane protein 1) [NCBI Gene 3916] {aka CD107a, LAMPA, LGP120}
- **Diseases:** neurodevelopmental disorders (MESH:D002658), Parkinson's (MESH:D010300), neurodegenerative diseases (MESH:D019636)
- **Chemicals:** Monensin (MESH:D008985), Nigericin (MESH:D009550), PI(3,5)P2 (MESH:C106336)
- **Species:** Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11864672/full.md

## References

1 references — full list in the complete paper: https://tomesphere.com/paper/PMC11864672/full.md

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Source: https://tomesphere.com/paper/PMC11864672