# Identification of Ziziphus jujuba cv. Dongzao DNA Demethylase ZjROS1 Gene Family and Construction of CRISPR/Cas9-Mediated Gene-Editing Vector

**Authors:** Jiaqi Wang, Huiran Wang, Jiayi Zhai, Fulun Zhu, Yufeng Ren, Jun Zhou, Zhikai Zhang, Lan Luo, Wendi Xu

PMC · DOI: 10.3390/genes16020228 · 2025-02-17

## TL;DR

This study identifies the ZjROS1 gene family in a jujube variety and builds a gene-editing tool to explore its role in fruit development.

## Contribution

The study identifies the ZjROS1 gene family in Ziziphus jujuba cv. Dongzao and constructs a CRISPR/Cas9 gene-editing vector for functional analysis.

## Key findings

- Three ZjROS1 genes were identified with distinct subcellular localization patterns.
- ZjROS1-2 showed high expression in flowers and fruits of Z. jujuba cv. Dongzao.
- A CRISPR/Cas9 gene-editing vector was successfully constructed for ZjROS1.

## Abstract

DNA methylation is one of the earliest and most extensively studied epigenetic regulatory mechanisms. The ROS1 (Repressor of Silencing 1) gene was first discovered in Arabidopsis thaliana, and it is a DNA demethylase that can remove 5-methylcytosine from DNA, thereby affecting DNA methylation levels and gene expression. Objectives: The objective of this study was to investigate the role of ROS1 in the development and maturation of Ziziphus jujuba cv. “Dongzao” fruit. Methods: We cloned the ROS1 gene and conducted bioinformatics and expression characteristics analyses on it. Results: Three ROS1 genes, named ZjROS1-1~3, was identified, and each member protein was localized in the nucleus, cytoskeleton, chloroplast, and vacuole. The promoter contained cis-elements such as light response, plant hormone signal transduction, and stress response cis-elements, and it interacted with many proteins such as CMT, MET, and ZDP. The results of the real-time fluorescence quantitative PCR show that ZjROS1 has specific expression patterns in different tissues of Z. jujuba cv. Dongzao, and the expression of ZjROS1-2 in flowers and fruits is high. At the same time, CRISPR/Cas9 technology was used to construct a gene-editing vector for ZjROS1, which provided a basis for the subsequent genetic transformation. Conclusions: In this study, the biological function of ZjROS1 was clarified and a gene-editing vector was constructed, which provided a theoretical basis for the regulation mechanism of demethylase ZjROS1 in the fruit ripening and development of Z. jujuba cv. Dongzao.

## Linked entities

- **Genes:** ROS1 (ROS proto-oncogene 1, receptor tyrosine kinase) [NCBI Gene 6098], cmt (comet) [NCBI Gene 5656864], MET (MET proto-oncogene, receptor tyrosine kinase) [NCBI Gene 4233], LOC109228750 (polynucleotide 3'-phosphatase ZDP) [NCBI Gene 109228750]
- **Proteins:** cmt (comet), MET (MET proto-oncogene, receptor tyrosine kinase), LOC109228750 (polynucleotide 3'-phosphatase ZDP)
- **Species:** Ziziphus jujuba (taxon 326968), Arabidopsis thaliana (taxon 3702)

## Full-text entities

- **Genes:** DML1 (demeter-like 1) [NCBI Gene 818224] {aka AtROS1, F1O11.12, F1O11_12, REPRESSOR OF SILENCING1, ROS1, demeter-like 1}
- **Chemicals:** 5-methylcytosine (MESH:D044503)
- **Species:** Arabidopsis thaliana (mouse-ear cress, species) [taxon 3702]

## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11855291/full.md

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Source: https://tomesphere.com/paper/PMC11855291