# New Genes Tied to Endocrine, Metabolic, and Dietary Regulation of Lifespan from a Caenorhabditis elegans Genomic RNAi Screen

**Authors:** Malene Hansen, Ao-Lin Hsu, Andrew Dillin, Cynthia Kenyon

PMC · DOI: 10.1371/journal.pgen.0010017 · PLoS Genetics · 2005-07-25

## TL;DR

Researchers found 23 new genes in worms that affect lifespan, showing how diet, stress, and hormones influence aging.

## Contribution

A genome-wide RNAi screen in C. elegans identified 23 new longevity genes and clarified roles of dietary restriction and conserved pathways.

## Key findings

- Dietary restriction extends lifespan by down-regulating genes involved in macromolecule methylation.
- Integrin signaling likely plays a conserved role in lifespan regulation.
- Lipophilic hormones may influence lifespan via the DAF-16/FOXO pathway.

## Abstract

Most of our knowledge about the regulation of aging comes from mutants originally isolated for other phenotypes. To ask whether our current view of aging has been affected by selection bias, and to deepen our understanding of known longevity pathways, we screened a genomic Caenorhabditis elegans RNAi library for clones that extend lifespan. We identified 23 new longevity genes affecting signal transduction, the stress response, gene expression, and metabolism and assigned these genes to specific longevity pathways. Our most important findings are (i) that dietary restriction extends C. elegans' lifespan by down-regulating expression of key genes, including a gene required for methylation of many macromolecules, (ii) that integrin signaling is likely to play a general, evolutionarily conserved role in lifespan regulation, and (iii) that specific lipophilic hormones may influence lifespan in a DAF-16/FOXO-dependent fashion. Surprisingly, of the new genes that have conserved sequence domains, only one could not be associated with a known longevity pathway. Thus, our current view of the genetics of aging has probably not been distorted substantially by selection bias.

Lifespan in C. elegans is influenced by several genetic pathways and processes; a great deal of the information about this regulation of aging comes from genetic mutants originally identified because of other phenotypes. Therefore, to ask whether the current view of the genetics of aging has been significantly affected by selection bias, and to deepen the understanding of known longevity pathways, Hansen et al. screened a genome-wide RNAi library for bacterial clones that extend lifespan when fed to the nematode Caenorhabditis elegans.

The investigators identified 23 new longevity genes affecting signal transduction, the stress response, gene expression, and metabolism and assigned these genes to specific longevity pathways. Their most important findings were (i) that dietary restriction extended C. elegans' lifespan by down-regulating expression of key genes, including a gene required for methylation of many macromolecules, (ii) that integrin signaling is likely to play a general, evolutionarily conserved role in lifespan regulation, and (iii) that specific lipophilic hormones may influence lifespan through the conserved insulin/IGF-1 signaling pathway.

Surprisingly, the authors found that of the new genes that have conserved sequence domains, only one could not be associated with a known longevity pathway. Thus, the current view of the genetics of aging has probably not been distorted substantially by selection bias. The authors expect the further study of these genes to provide valuable information about the mechanisms of aging, not only in C. elegans but also in higher organisms.

## Linked entities

- **Genes:** daf-16 (Forkhead box protein O) [NCBI Gene 172981]
- **Species:** Caenorhabditis elegans (taxon 6239)

## Full-text entities

- **Genes:** hsf-1 (Heat shock transcription factor hsf-1) [NCBI Gene 173078], Y57G11C.1147 (Protein BRICK1) [NCBI Gene 178404], INS (insulin) [NCBI Gene 3630] {aka IDDM, IDDM1, IDDM2, ILPR, IRDN, MODY10}, ddl-3 (TPR_REGION domain-containing protein) [NCBI Gene 175087], cyc-1 (Cytochrome c domain-containing protein) [NCBI Gene 172582], daf-2 (Insulin-like receptor subunit beta;Protein kinase domain-containing protein;receptor protein-tyrosine kinase) [NCBI Gene 175410], ttr-1 (Transthyretin-like protein 1) [NCBI Gene 186958], nuo-5 (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial) [NCBI Gene 178735], PIGQ (phosphatidylinositol glycan anchor biosynthesis class Q) [NCBI Gene 9091] {aka DEE77, EIEE77, GPI1, GPIBD19, MCAHS4, c407A10.1}, rab-10 (Ras-related protein Rab-10) [NCBI Gene 266836], daf-16 (Forkhead box protein O) [NCBI Gene 172981], atp-3 (Oligomycin sensitivity conferral protein) [NCBI Gene 172195], sams-1 (putative S-adenosylmethionine synthase 1) [NCBI Gene 181370], ddl-1 (WASH complex subunit homolog 3) [NCBI Gene 173954], SH2D1B (SH2 domain containing 1B) [NCBI Gene 117157] {aka EAT2}, Mat1a (methionine adenosyltransferase 1A) [NCBI Gene 25331] {aka AdoMet, SADE, SAS}, fem-1 (Sex-determining protein fem-1) [NCBI Gene 177335], RAB10 (RAB10, member RAS oncogene family) [NCBI Gene 10890], GLP1R (glucagon like peptide 1 receptor) [NCBI Gene 2740] {aka GLP-1, GLP-1-R, GLP-1R}, cox-5B (COX5B-domain-containing protein) [NCBI Gene 172832], sinh-1 (Stress-activated map kinase-interacting protein 1 homolog) [NCBI Gene 190339], asb-2 (ATP synthase F(0) complex subunit B2, mitochondrial) [NCBI Gene 180718], eat-2 (Neuronal acetylcholine receptor subunit eat-2) [NCBI Gene 175072], hsb-1 (Heat shock factor-binding protein 1) [NCBI Gene 178208], hda-10 (Histone deacetylase domain-containing protein) [NCBI Gene 175039], isp-1 (Cytochrome b-c1 complex subunit Rieske, mitochondrial) [NCBI Gene 177609], cox-5A (Cytochrome c oxidase subunit 5A, mitochondrial) [NCBI Gene 176707], ril-1 (RNAi-Induced Longevity) [NCBI Gene 179958], IGF1 (insulin like growth factor 1) [NCBI Gene 3479] {aka IGF, IGF-I, IGFI, MGF}, gpi-1 (Glucose-6-phosphate isomerase) [NCBI Gene 173227], F26F2.1 (Trichohyalin-like) [NCBI Gene 184982], mes-1 (Protein mes-1) [NCBI Gene 181362], pat-6 (Paralyzed arrest at two-fold protein 6) [NCBI Gene 176848], cchl-1 (putative holocytochrome-c-type synthase) [NCBI Gene 174713], inx-8 (Innexin-8) [NCBI Gene 178101], unc-52 (Basement membrane proteoglycan;Basement membrane-specific heparan sulfate proteoglycan core protein;Ig-like domain-containing protein) [NCBI Gene 175126], drr-2 (RRM domain-containing protein) [NCBI Gene 259546], Ilk (Integrin linked kinase) [NCBI Gene 53573] {aka CG10504, CT29478, DmILK, Dmel\CG10504, l(3)78Ca}, age-1 (Phosphatidylinositol 3-kinase age-1) [NCBI Gene 174762], FAM107A (family with sequence similarity 107 member A) [NCBI Gene 11170] {aka DRR1, TU3A}, clk-1 (NADPH-dependent 3-demethoxyubiquinone 3-hydroxylase, mitochondrial) [NCBI Gene 175729], MAT1A (methionine adenosyltransferase 1A) [NCBI Gene 4143] {aka MAT, MATA1, SAMS, SAMS1}, AGFG1 (ArfGAP with FG repeats 1) [NCBI Gene 3267] {aka HRB, RAB, RIP}, pat-4 (Integrin-linked protein kinase homolog pat-4) [NCBI Gene 175175], akt-1 (Serine/threonine-protein kinase akt-1) [NCBI Gene 179424], mys (myospheroid) [NCBI Gene 44885] {aka BetaPS, BetaPS-Int, CG1560, CT40473, Dmel\CG1560, EM28}, nuo-4 (Deoxynucleoside kinase domain-containing protein;NADH dehydrogenase) [NCBI Gene 176001], ril-2 (RNAi-Induced Longevity) [NCBI Gene 179725], zig-6 (Zwei Ig domain protein zig-6) [NCBI Gene 192089], Sin1 (SAPK-interacting protein 1) [NCBI Gene 36604] {aka CG10105, Dmel\CG10105, dSIN1, dSin1}, acdh-2 (Acyl-CoA dehydrogenase/oxidase N-terminal domain-containing protein;Acyl-CoA_dh_N domain-containing protein;Short/branched chain specific acyl-CoA dehydrogenase, mitochondrial) [NCBI Gene 173940], atp-5 (ATP synthase subunit d, mitochondrial) [NCBI Gene 179541], drr-1 (MARVEL domain-containing protein) [NCBI Gene 174994], atp-4 (ATP synthase-coupling factor 6, mitochondrial) [NCBI Gene 179025], nuo-2 (NADH dehydrogenase) [NCBI Gene 172363], ddl-2 (WASH complex subunit homolog 1) [NCBI Gene 190025], act-1 (Actin-1) [NCBI Gene 179535], rha-2 (Putative ATP-dependent RNA helicase rha-2) [NCBI Gene 176207], nuo-3 (NADH dehydrogenase) [NCBI Gene 36805062], maoc-1 (MaoC-like domain-containing protein) [NCBI Gene 174181]
- **Diseases:** diabetes (MESH:D003920), metabolic diseases (MESH:D008659), cancer (MESH:D009369), DR (MESH:D002313)
- **Species:** C. elegans [taxon 328850], Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606], Caenorhabditis elegans (species) [taxon 6239], Mus musculus (house mouse, species) [taxon 10090], Drosophila melanogaster (fruit fly, species) [taxon 7227], Schizosaccharomyces pombe (fission yeast, species) [taxon 4896], Bacteria Latreille et al. 1825 (Bacteria stick insect, genus) [taxon 629395]
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232), N2 — Mus musculus (Mouse), Mouse neuroblastoma, Cancer cell line (CVCL_0470), CF512 — Mus musculus (Mouse), Hybridoma (CVCL_B6NC)

## Full text

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## Figures

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## References

56 references — full list in the complete paper: https://tomesphere.com/paper/PMC1183531/full.md

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Source: https://tomesphere.com/paper/PMC1183531