# Expression Patterns of Escape Genes in Turner Syndrome Fibroblasts and Induced Pluripotent Stem Cells

**Authors:** Seki Byun, Sang-Hoon Yoon, Yean-Ju Hong, Hyun-Sik Jang, Bong-Jong Seo, Gyu-Tae Choi, Hyeonwoo La, Je-Woo Lee, Kwonho Hong, Jeong-Tae Do

PMC · DOI: 10.3390/ijms26030975 · International Journal of Molecular Sciences · 2025-01-24

## TL;DR

This study explores how escape genes are expressed in Turner Syndrome cells, identifying potential genes linked to the disorder's characteristics.

## Contribution

The study identifies differentially expressed escape genes in Turner Syndrome iPSCs and fibroblasts, suggesting their potential role in the TS phenotype.

## Key findings

- Forty-five escape genes showed differential expression between wild-type and Turner Syndrome cell lines.
- Five genes (ATP7A, PHKA1, EBP, ZFX, and SMC1A) were implicated in the Turner Syndrome phenotype.
- Reprogrammed iPSCs from both WT and TS samples exhibited pluripotency markers and differentiation potential.

## Abstract

Turner syndrome (TS) is an X monosomy-related disorder caused by X chromosome nondisjunction during embryonic development. Patients with TS have only one intact X chromosome, with the other either completely or partially lost. TS affects various tissues, including the liver, kidneys, brain, cardiovascular system, and ovaries. These abnormalities are suggested to involve an altered dosage of escape genes that evade X chromosome inactivation. However, the mechanisms and roles of these escape genes in the TS phenotype remain unclear. We hypothesized that the expression levels of escape genes differ between wild-type (WT) and TS cell lines. In this study, we generated induced pluripotent stem cell (iPSC) lines from WT and TS fibroblasts and examined the expression levels of escape genes in both undifferentiated fibroblasts and reprogrammed iPSCs from WT and TS samples. The reprogrammed WT and TS iPSCs exhibited general characteristics of pluripotency, including the expression of pluripotency markers and the potential to differentiate into all three germ layers. Forty-five escape genes were differentially expressed between the WT and TS cell lines. Among these, five genes (ATP7A, PHKA1, EBP, ZFX, and SMC1A) were suggested to be implicated in the TS phenotype. However, further studies using additional cell lines are necessary to clarify the correlation between TS and escape genes.

## Linked entities

- **Genes:** ATP7A (ATPase copper transporting alpha) [NCBI Gene 538], PHKA1 (phosphorylase kinase regulatory subunit alpha 1) [NCBI Gene 5255], EBP (EBP cholestenol delta-isomerase) [NCBI Gene 10682], ZFX (zinc finger protein X-linked) [NCBI Gene 7543], SMC1A (structural maintenance of chromosomes 1A) [NCBI Gene 8243]
- **Diseases:** Turner syndrome (MONDO:0019499)

## Full-text entities

- **Genes:** EBP (EBP cholestenol delta-isomerase) [NCBI Gene 10682] {aka CDPX2, CHO2, CPX, CPXD, D8D7I, MEND}, SMC1A (structural maintenance of chromosomes 1A) [NCBI Gene 8243] {aka CDLS2, DEE85, DXS423E, EIEE85, SB1.8, SMC1}, PHKA1 (phosphorylase kinase regulatory subunit alpha 1) [NCBI Gene 5255] {aka PHKA}, ATP7A (ATPase copper transporting alpha) [NCBI Gene 538] {aka DSMAX, HMNX, MK, MNK, SMAX3}, ZFX (zinc finger protein X-linked) [NCBI Gene 7543] {aka MRXS37, ZNF926}
- **Diseases:** TS (MESH:D014424)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11816654/full.md

## References

39 references — full list in the complete paper: https://tomesphere.com/paper/PMC11816654/full.md

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Source: https://tomesphere.com/paper/PMC11816654