# Advancements in Viral Genomics: Gated Recurrent Unit Modeling of SARS-CoV-2, SARS, MERS, and Ebola viruses

**Authors:** Abhishak Raj Devaraj, Victor Jose Marianthiran

PMC · DOI: 10.1590/0037-8682-0178-2024 · Revista da Sociedade Brasileira de Medicina Tropical · 2025-02-07

## TL;DR

This paper uses a deep learning model to analyze the genomes of four viruses, achieving high accuracy and offering potential for better diagnostics and treatments.

## Contribution

A novel Gated Recurrent Unit model for viral genomic analysis with high performance across multiple viruses.

## Key findings

- The model achieved over 98% accuracy for SARS-CoV-2, SARS, MERS, and Ebola.
- Precision and recall values were consistently above 92%, showing strong predictive capability.
- The model's robustness suggests potential for early diagnosis and outbreak prediction.

## Abstract

Emerging infections have posed persistent threats to humanity throughout history. Rapid and unprecedented anthropogenic, behavioral, and social transformations witnessed in the past century have expedited the emergence of novel pathogens, intensifying their impact on the global human population.

This study aimed to comprehensively analyze and compare the genomic sequences of four distinct viruses: SARS-CoV-2, SARS, MERS, and Ebola. Advanced genomic sequencing techniques and a Gated Recurrent Unit-based deep learning model were used to examine the intricate genetic makeup of these viruses. The proposed study sheds light on their evolutionary dynamics, transmission patterns, and pathogenicity and contributes to the development of effective diagnostic and therapeutic interventions.

This model exhibited exceptional performance as evidenced by accuracy values of 99.01%, 98.91%, 98.35%, and 98.04% for SARS-CoV-2, SARS, MERS, and Ebola respectively. Precision values ranged from 98.1% to 98.72%, recall values consistently surpassed 92%, and F1 scores ranged from 95.47% to 96.37%.

These results underscore the robustness of this model and its potential utility in genomic analysis, paving the way for enhanced understanding, preparedness, and response to emerging viral threats. In the future, this research will focus on creating better diagnostic instruments for the early identification of viral illnesses, developing vaccinations, and tailoring treatments based on the genetic composition and evolutionary patterns of different viruses. This model can be modified to examine a more extensive variety of diseases and recently discovered viruses to predict future outbreaks and their effects on global health.

## Linked entities

- **Diseases:** SARS-CoV-2 (MONDO:0100096), SARS (MONDO:0005091), MERS (MONDO:0100116), Ebola (MONDO:0005737)

## Full-text entities

- **Diseases:** SARS-CoV-2 (MESH:D000086382), Viral (MESH:D014777), SARS (MESH:D045169), Ebola (MESH:D019142), MERS (MESH:D018352)
- **Species:** Homo sapiens (human, species) [taxon 9606], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049]

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11805527/full.md

## References

32 references — full list in the complete paper: https://tomesphere.com/paper/PMC11805527/full.md

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Source: https://tomesphere.com/paper/PMC11805527