# The Role of Vitamin D Metabolism Genes and Their Genomic Background in Shaping Cyclosporine A Dosage Parameters after Kidney Transplantation

**Authors:** Katarzyna Kotowska, Bartosz Wojciuk, Jerzy Sieńko, Anna Bogacz, Iga Stukan, Sylwester Drożdżal, Bogusław Czerny, Karol Tejchman, Grzegorz Trybek, Bogusław Machaliński, Maciej Kotowski

PMC · DOI: 10.3390/jcm13164966 · 2024-08-22

## TL;DR

This study shows that a specific vitamin D-related gene variant can predict the right dose of a key drug after kidney transplants, helping avoid vitamin D deficiency and improve patient care.

## Contribution

The study identifies DBP rs2282679 as a significant predictor of cyclosporin A dosage requirements in kidney transplant patients.

## Key findings

- DBP rs2282679 polymorphism strongly predicts the cyclosporin A concentration/dose ratio.
- CYP2R1 rs10741657 polymorphism did not show predictive significance for cyclosporin A dosage.
- CTLA4 and IL10 gene variants were identified as potential predictors but lacked statistical significance.

## Abstract

Background: Kidney transplantation is followed by immunosuppressive therapy involving calcineurin inhibitors (CNIs) such as cyclosporin A. However, long-term high CNIs doses can lead to vitamin D deficiency, and genetic variations influencing vitamin D levels can indirectly impact the necessary CNIs dosage. This study investigates the impact of genetic variations of vitamin D binding protein (DBP) rs2282679 and CYP2R1 hydroxylase rs10741657 polymorphisms on the cyclosporin A dosage in kidney transplant recipients. Additional polymorphisims of genes that are predicted to influence the pharmacogenetic profile were included. Methods: Gene polymorphisms in 177 kidney transplant recipients were analyzed using data mining techniques, including the Random Forest algorithm and Classification and Regression Trees (C&RT). The relationship between the concentration/dose (C/D) ratio of cyclosporin A and genetic profiles was assessed to determine the predictive value of DBP rs2282679 and CYP2R1 rs10741657 polymorphisms. Results: Polymorphic variants of the DBP (rs2282679) demonstrated a strong predictive value for the cyclosporin A C/D ratio in post-kidney transplantation patients. By contrast, the CYP2R1 polymorphism (rs10741657) did not show predictive significance. Additionally, the immune response genes rs231775 CTLA4 and rs1800896 IL10 were identified as predictors of cyclosporin A response, though these did not result in statistically significant differences. Conclusions:
DBP rs2282679 polymorphisms can significantly predict the cyclosporin A C/D ratio, potentially enhancing the accuracy of CNI dosing. This can help identify patient groups at risk of vitamin D deficiency, ultimately improving the management of kidney transplant recipients. Understanding these genetic influences allows for more personalized and effective treatment strategies, contributing to better long-term outcomes for patients.

## Linked entities

- **Genes:** DBP (D-box binding PAR bZIP transcription factor) [NCBI Gene 1628], CYP2R1 (cytochrome P450 family 2 subfamily R member 1) [NCBI Gene 120227], CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493], IL10 (interleukin 10) [NCBI Gene 3586]
- **Chemicals:** cyclosporin A (PubChem CID 5284373)

## Full-text entities

- **Genes:** CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493] {aka ALPS5, CD, CD152, CELIAC3, CTLA-4, GRD4}, GC (GC vitamin D binding protein) [NCBI Gene 2638] {aka DBP, DBP-maf, DBP/GC, GRD3, Gc-MAF, GcMAF}, CYP2R1 (cytochrome P450 family 2 subfamily R member 1) [NCBI Gene 120227], IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, DBP (D-box binding PAR bZIP transcription factor) [NCBI Gene 1628] {aka DABP, taxREB302}
- **Diseases:** vitamin D deficiency (MESH:D014808)
- **Chemicals:** Cyclosporine A (MESH:D016572), Vitamin D (MESH:D014807)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** rs1800896, rs231775, rs10741657, rs2282679

## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11355102/full.md

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Source: https://tomesphere.com/paper/PMC11355102