# Transcriptomic Signatures in Lung Allografts and Their Therapeutic Implications

**Authors:** Michael Tyler Guinn, Ramiro Fernandez, Sean Lau, Gabriel Loor

PMC · DOI: 10.3390/biomedicines12081793 · Biomedicines · 2024-08-07

## TL;DR

This review explores how combining lung preservation with gene expression analysis can improve donor lung function and develop targeted therapies.

## Contribution

The paper reviews the integration of transcriptomics with EVLP to guide therapeutic strategies for lung allografts.

## Key findings

- Transcriptomic analysis reveals molecular pathways in lung allografts during preservation.
- Combining EVLP with gene expression data can lead to targeted therapies for donor lungs.
- Current therapeutics are being optimized using transcriptional insights for better lung function.

## Abstract

Ex vivo lung perfusion (EVLP) is a well-established method of lung preservation in clinical transplantation. Transcriptomic analyses of cells and tissues uncover gene expression patterns which reveal granular molecular pathways and cellular programs under various conditions. Coupling EVLP and transcriptomics may provide insights into lung allograft physiology at a molecular level with the potential to develop targeted therapies to enhance or repair the donor lung. This review examines the current landscape of transcriptional analysis of lung allografts in the context of state-of-the-art therapeutics that have been developed to optimize lung allograft function.

## Full-text entities

- **Genes:** ELANE (elastase, neutrophil expressed) [NCBI Gene 1991] {aka ELA2, GE, HLE, HNE, NE, PMN-E}, HMGB1 (high mobility group box 1) [NCBI Gene 3146] {aka HMG-1, HMG1, HMG3, SBP-1}, Cxcl15 (C-X-C motif chemokine ligand 15) [NCBI Gene 20309] {aka Il8, Scyb15, lungkine, weche}, IL10 (interleukin 10) [NCBI Gene 3586] {aka CSIF, GVHDS, IL-10, IL10A, TGIF}, Tnf (tumor necrosis factor) [NCBI Gene 24835] {aka RATTNF, TNF-alpha, Tnfa}, Il17a (interleukin 17A) [NCBI Gene 16171] {aka Ctla-8, Ctla8, IL-17, IL-17A, Il17}, PTX3 (pentraxin 3) [NCBI Gene 5806] {aka TNFAIP5, TSG-14}, MIR548B (microRNA 548b) [NCBI Gene 693128] {aka MIRN548B}, CXCL2 (C-X-C motif chemokine ligand 2) [NCBI Gene 2920] {aka CINC-2a, GRO2, GROb, MGSA-b, MIP-2a, MIP2}, Bcl2 (BCL2, apoptosis regulator) [NCBI Gene 24224] {aka Bcl-2}, Cxcl2 (C-X-C motif chemokine ligand 2) [NCBI Gene 114105] {aka Mip-2, Scyb2}, MYD88 (MYD88 innate immune signal transduction adaptor) [NCBI Gene 4615] {aka IMD68, MYD88D, WM1}, SERPINA1 (serpin family A member 1) [NCBI Gene 5265] {aka A1A, A1AT, AAT, PI, PI1, PRO2275}, Il1b (interleukin 1 beta) [NCBI Gene 24494] {aka IL-1F2}, Ccl2 (C-C motif chemokine ligand 2) [NCBI Gene 24770] {aka MCP-1, MCP1, Scya2, Sigje}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, CXCL1 (C-X-C motif chemokine ligand 1) [NCBI Gene 2919] {aka FSP, GRO1, GROa, MGSA, MGSA-a, NAP-3}, Casp3 (caspase 3) [NCBI Gene 25402] {aka CPP32-beta, Lice, Yama}, ADORA2B (adenosine A2b receptor) [NCBI Gene 136] {aka ADORA2}, CASP1 (caspase 1, apoptosis-related cysteine peptidase) [NCBI Gene 397319], Il1 (interleukin 1 complex) [NCBI Gene 111343] {aka Il-1}, MAPK14 (mitogen-activated protein kinase 14) [NCBI Gene 1432] {aka CSBP, CSBP1, CSBP2, CSPB1, EXIP, Mxi2}, CCL20 (C-C motif chemokine ligand 20) [NCBI Gene 6364] {aka CKb4, Exodus, LARC, MIP-3-alpha, MIP-3a, MIP3A}, Cxcl1 (C-X-C motif chemokine ligand 1) [NCBI Gene 81503] {aka CINC-1, Gro1}, MIR17 (microRNA 17) [NCBI Gene 406952] {aka MIR17-5p, MIR91, MIRN17, MIRN91, hsa-mir-17, miR-17}, Il4 (interleukin 4) [NCBI Gene 287287] {aka Il4e12}, Il10 (interleukin 10) [NCBI Gene 25325] {aka IL10X, If2a}, ISYNA1 (inositol-3-phosphate synthase 1) [NCBI Gene 51477] {aka INO1, INOS, IPS, IPS 1, IPS-1}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, Adora2a (adenosine A2a receptor) [NCBI Gene 11540] {aka A2AAR, A2aR, AA2AR, ARA2A}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}
- **Diseases:** ARDS (MESH:D012128), Inflammation (MESH:D007249), ischemic injury (MESH:D017202), lung injury (MESH:D055370), lung allograft dysfunction (MESH:D000092122), injury to people or property (MESH:C000719191), organ dysfunction (MESH:D009102), lung (MESH:D008171), mitochondrial dysfunction (MESH:D028361), edema (MESH:D004487), toxicity (MESH:D064420), pulmonary edema (MESH:D011654), Pulmonary vascular (MESH:D057772), IRI (MESH:D015427), PGD (MESH:D055031), cold ischemia and ischemia-reperfusion injury (MESH:D007511), EVLP (MESH:C536830)
- **Chemicals:** steroids (MESH:D013256), Hydrogen (MESH:D006859), Perfluorocarbon (MESH:D005466), trimetazidine (MESH:D014292), pyrrolidine dithiocarbamate (MESH:C020972), oxygen (MESH:D010100), LPS (MESH:D008070), N-acetylcysteine (MESH:D000111), acid (MESH:D000143), aspirin (MESH:D001241), EVLP (-), ATP (MESH:D000255)
- **Species:** Rattus norvegicus (brown rat, species) [taxon 10116], Mus musculus (house mouse, species) [taxon 10090], Sus scrofa (pig, species) [taxon 9823], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** A2A

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11351513/full.md

## References

89 references — full list in the complete paper: https://tomesphere.com/paper/PMC11351513/full.md

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Source: https://tomesphere.com/paper/PMC11351513