# Genomic evidence that Ornithinicoccus soli Jiang et al. 2020 is a later heterotypic synonym of Segeticoccus rhizosphaerae Lee and Whang 2020

**Authors:** Qing Liu, Yu-Hua Xin

PMC · DOI: 10.1099/ijsem.0.006503 · International Journal of Systematic and Evolutionary Microbiology · 2024-08-27

## TL;DR

This study shows that two soil bacteria species, Ornithinicoccus soli and Segeticoccus rhizosphaerae, are actually the same species based on genomic and phylogenetic evidence.

## Contribution

The paper provides genomic evidence to reclassify Ornithinicoccus soli as a later synonym of Segeticoccus rhizosphaerae.

## Key findings

- Both strains share identical 16S rRNA gene sequences and similar genomic features.
- Average nucleotide identity and digital DNA–DNA hybridization values confirm they are the same species.
- Phylogenetic analysis shows they form a distinct cluster separate from other genera.

## Abstract

The genus Segeticoccus includes only one species with validly published name, Segeticoccus rhizosphaerae. The type strain Segeticoccus rhizosphaerae YJ01T was isolated from soil in Korea, while Ornithinicoccus soli XNB-1T was isolated from soil in China. Both strains share similar phenotypic and chemotaxonomic characteristics, including predominant menaquinone MK-8(H4) and major polar lipids diphosphatidylglycerol and phosphatidylglycerol. Whole genome sequences revealed a DNA G+C content of 70.1 mol% for both strains and 100% similarity in their 16S rRNA gene sequences. Phylogenetic analysis showed they form a distinct cluster separate from other genera. Genomic comparisons showed average nucleotide identity and digital DNA–DNA hybridization values of 99.16 and 94.2%, respectively, indicating they represent a single species. Based on this genomic evidence, Ornithinicoccus soli Jiang et al. 2020 is proposed to be a later heterotypic synonym of Segeticoccus rhizosphaerae Lee and Whang 2020.

## Linked entities

- **Species:** Segeticoccus rhizosphaerae (taxon 1104777)

## Full-text entities

- **Chemicals:** diphosphatidylglycerol (MESH:D002308), menaquinone MK-8 (-), phosphatidylglycerol (MESH:D010715)
- **Species:** Ornithinicoccus soli [taxon 2574732]

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11350378/full.md

## References

17 references — full list in the complete paper: https://tomesphere.com/paper/PMC11350378/full.md

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Source: https://tomesphere.com/paper/PMC11350378