# A novel mitochondria-related algorithm for predicting the survival outcomes and drug sensitivity of patients with lung adenocarcinoma

**Authors:** Xianqiao Wu, Hang Chen, Zhen Ge, Binyu Luo, Hanbo Pan, Yiming Shen, Zuorun Xie, Chengwei Zhou

PMC · DOI: 10.3389/fmolb.2024.1397281 · Frontiers in Molecular Biosciences · 2024-08-08

## TL;DR

This paper introduces a new algorithm that uses mitochondrial data to predict survival and drug response in lung adenocarcinoma patients.

## Contribution

A novel algorithm combining cluster analysis and risk modeling for predicting survival and drug sensitivity in lung adenocarcinoma.

## Key findings

- Patients were grouped into three clusters with distinct survival outcomes and immune profiles.
- High-risk patients showed better sensitivity to certain chemotherapy drugs like Cisplatin and Docetaxel.
- The risk score combined with cancer stage improved prognostic accuracy for LUAD patients.

## Abstract

Mitochondria have always been considered too be closely related to the occurrence and development of malignant tumors. However, the bioinformatic analysis of mitochondria in lung adenocarcinoma (LUAD) has not been reported yet.

In the present study, we constructed a novel and reliable algorithm, comprising a consensus cluster analysis and risk assessment model, to predict the survival outcomes and tumor immunity for patients with terminal LUAD.

Patients with LUAD were classified into three clusters, and patients in cluster 1 exhibited the best survival outcomes. The patients in cluster 3 had the highest expression of PDL1 (encoding programmed cell death 1 ligand 11) and HAVCR2 (encoding Hepatitis A virus cellular receptor 2), and the highest tumor mutation burden (TMB). In the risk assessment model, patients in the low-risk group tended to have a significantly better survival outcome. Furthermore, the risk score combined with stage could act as a reliable independent prognostic indicator for patients with LUAD. The prognostic signature is a novel and effective biomarker to select anti-tumor drugs. Low-risk patients tended to have a higher expression of CTLA4 (encoding cytotoxic T-lymphocyte associated protein 4) and HAVCR2. Moreover, patients in the high-risk group were more sensitive to Cisplatin, Docetaxel, Erlotinib, Gemcitabine, and Paclitaxel, while low-risk patients would probably benefit more from Gefitinib.

We constructed a novel and reliable algorithm comprising a consensus cluster analysis and risk assessment model to predict survival outcomes, which functions as a reliable guideline for anti-tumor drug treatment for patients with terminal LUAD.

## Linked entities

- **Genes:** CD274 (CD274 molecule) [NCBI Gene 29126], HAVCR2 (hepatitis A virus cellular receptor 2) [NCBI Gene 84868], CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493]
- **Chemicals:** Cisplatin (PubChem CID 5460033), Docetaxel (PubChem CID 148124), Erlotinib (PubChem CID 176870), Gemcitabine (PubChem CID 60750), Paclitaxel (PubChem CID 36314), Gefitinib (PubChem CID 123631)
- **Diseases:** lung adenocarcinoma (MONDO:0005061)

## Full-text entities

- **Genes:** CTLA4 (cytotoxic T-lymphocyte associated protein 4) [NCBI Gene 1493] {aka ALPS5, CD, CD152, CELIAC3, CTLA-4, GRD4}, HAVCR2 (hepatitis A virus cellular receptor 2) [NCBI Gene 84868] {aka CD366, HAVcr-2, KIM-3, SPTCL, TIM3, TIMD-3}, CD274 (CD274 molecule) [NCBI Gene 29126] {aka ADMIO5, B7-H, B7H1, PD-L1, PDCD1L1, PDCD1LG1}
- **Diseases:** LUAD (MESH:D000077192), Mitochondria (MESH:C564971), malignant tumors (MESH:D009369)
- **Chemicals:** Docetaxel (MESH:D000077143), Gefitinib (MESH:D000077156), Gemcitabine (MESH:D000093542), Paclitaxel (MESH:D017239), Cisplatin (MESH:D002945), Erlotinib (MESH:D000069347)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

_Full body text omitted from this summary view._ Fetch the complete paper as Markdown: https://tomesphere.com/paper/PMC11342398/full.md

## Figures

9 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11342398/full.md

## References

57 references — full list in the complete paper: https://tomesphere.com/paper/PMC11342398/full.md

---
Source: https://tomesphere.com/paper/PMC11342398