# Early inflammatory profiles predict maximal disease severity in COVID-19: An unsupervised cluster analysis

**Authors:** Grace Kenny, Gurvin Saini, Colette Marie Gaillard, Riya Negi, Dana Alalwan, Alejandro Garcia Leon, Kathleen McCann, Willard Tinago, Christine Kelly, Aoife G. Cotter, Eoghan de Barra, Mary Horgan, Obada Yousif, Virginie Gautier, Alan Landay, Danny McAuley, Eoin R. Feeney, Cecilia O'Kane, Patrick WG. Mallon

PMC · DOI: 10.1016/j.heliyon.2024.e34694 · 2024-07-23

## TL;DR

The study finds that early immune system patterns in COVID-19 patients can predict how severe their disease will become, offering insights for better treatment strategies.

## Contribution

The novel contribution is identifying specific early inflammatory profiles that strongly predict severe disease outcomes in COVID-19 patients.

## Key findings

- Four distinct inflammatory profiles were identified in early-stage COVID-19 patients.
- Cluster 3 showed the highest odds of progressing to severe disease despite lower growth factor and endothelial activation markers.
- Early alveolar epithelial injury markers were strongly associated with severe disease progression.

## Abstract

The inflammatory changes that underlie the heterogeneous presentations of COVID-19 remain incompletely understood. In this study we aimed to identify inflammatory profiles that precede the development of severe COVID-19, that could serve as targets for optimised delivery of immunomodulatory therapies and provide insights for the development of new therapies.

We included individuals sampled <10 days from COVID-19 symptom onset, recruited from both inpatient and outpatient settings. We measured 61 biomarkers in plasma, including markers of innate immune and T cell activation, coagulation, tissue repair and lung injury. We used principal component analysis and hierarchical clustering to derive biomarker clusters, and ordinal logistic regression to explore associations between cluster membership and maximal disease severity, adjusting for known risk factors for severe COVID-19.

In 312 individuals, median (IQR) 7 (4–9) days from symptom onset, we found four clusters. Cluster 1 was characterised by low overall inflammation, cluster 2 was characterised by higher levels of growth factors and markers of endothelial activation (EGF, VEGF, PDGF, TGFα, PAI-1 and p-selectin). Cluster 3 and 4 both had higher overall inflammation. Cluster 4 had the highest levels of most markers including markers of innate immune activation (IL6, procalcitonin, CRP, TNFα), and coagulation (D-dimer, TPO), in contrast cluster 3 had the highest levels of alveolar epithelial injury markers (RAGE, ST2), but relative downregulation of growth factors and endothelial activation markers, suggesting a dysfunctional inflammatory pattern. In unadjusted and adjusted analysis, compared to cluster 1, cluster 3 had the highest odds of progressing to more severe disease (unadjusted OR (95%CI) 9.02 (4.53–17.96), adjusted OR (95%CI) 6.02 (2.70–13.39)).

Early inflammatory profiles predicted subsequent maximal disease severity independent of risk factors for severe COVID-19. A cluster with downregulation of growth factors and endothelial activation markers, and early evidence of alveolar epithelial injury, had the highest risk of severe COVID-19.

## Linked entities

- **Proteins:** IL6 (interleukin 6), CRP (C-reactive protein), TNF (tumor necrosis factor), TPO (thyroid peroxidase), AGER (advanced glycosylation end-product specific receptor), ST2 (suppression of tumorigenicity 2), EGF (epidermal growth factor), VEGFA (vascular endothelial growth factor A), pdgfa.S (platelet derived growth factor subunit A S homeolog), TGFA (transforming growth factor alpha), SERPINE1 (serpin family E member 1), SELP (selectin P)
- **Diseases:** COVID-19 (MONDO:0100096)

## Full-text entities

- **Genes:** TGFA (transforming growth factor alpha) [NCBI Gene 7039] {aka TFGA}, VEGFA (vascular endothelial growth factor A) [NCBI Gene 7422] {aka L-VEGF, MVCD1, VEGF, VPF}, ST2 (suppression of tumorigenicity 2) [NCBI Gene 6761], SELP (selectin P) [NCBI Gene 6403] {aka CD62, CD62P, GMP140, GRMP, LECAM3, PADGEM}, EGF (epidermal growth factor) [NCBI Gene 1950] {aka HOMG4, URG}, TPO (thyroid peroxidase) [NCBI Gene 7173] {aka MSA, TDH2A, TPX}, IL6 (interleukin 6) [NCBI Gene 3569] {aka BSF-2, BSF2, CDF, HGF, HSF, IFN-beta-2}, CRP (C-reactive protein) [NCBI Gene 1401] {aka PTX1}, SERPINE1 (serpin family E member 1) [NCBI Gene 5054] {aka PAI, PAI-1, PAI1, PLANH1}, AGER (advanced glycosylation end-product specific receptor) [NCBI Gene 177] {aka RAGE, SCARJ1, sRAGE}, TNF (tumor necrosis factor) [NCBI Gene 7124] {aka DIF, IMD127, TNF-alpha, TNFA, TNFSF2, TNLG1F}
- **Diseases:** alveolar epithelial injury (MESH:D009375), coagulation (MESH:D001778), inflammation (MESH:D007249), COVID-19 (MESH:D000086382), lung injury (MESH:D055370)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11320140/full.md

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Source: https://tomesphere.com/paper/PMC11320140