# Multi-Level Protocol for Mechanistic Reaction Studies Using Semi-Local Fitted Potential Energy Surfaces

**Authors:** Tomislav Piskor, Peter Pinski, Thilo Mast, Vladimir Rybkin

PMC · DOI: 10.3390/ijms25158530 · International Journal of Molecular Sciences · 2024-08-05

## TL;DR

This paper introduces a cost-effective method for studying chemical reactions using machine learning to create accurate potential energy surfaces.

## Contribution

A multi-level protocol combining NEB and sGDML for efficient and accurate reaction mechanism studies.

## Key findings

- Only 50 to 150 accurate energy-force evaluations are needed for qualitative agreement in reaction paths and barriers.
- The method achieves qualitative agreement in vibrational frequencies and reaction rate coefficients.
- The protocol is computationally efficient and agnostic to the transition state's nature.

## Abstract

In this work, we propose a multi-level protocol for routine theoretical studies of chemical reaction mechanisms. The initial reaction paths of our investigated systems are sampled using the Nudged Elastic Band (NEB) method driven by a cheap electronic structure method. Forces recalculated at the more accurate electronic structure theory for a set of points on the path are fitted with a machine learning technique (in our case symmetric gradient domain machine learning or sGDML) to produce a semi-local reactive potential energy surface (PES), embracing reactants, products and transition state (TS) regions. This approach has been successfully applied to a unimolecular (Bergman cyclization of enediyne) and a bimolecular (SN2 substitution) reaction. In particular, we demonstrate that with only 50 to 150 energy-force evaluations with the accurate reference methods (here complete-active-space self-consistent field, CASSCF, and coupled-cluster singles and doubles, CCSD) it is possible to construct a semi-local PES giving qualitative agreement for stationary-point geometries, intrinsic reaction coordinates and barriers. Furthermore, we find a qualitative agreement in vibrational frequencies and reaction rate coefficients. The key aspect of the method’s performance is its multi-level nature, which not only saves computational effort but also allows extracting meaningful information along the reaction path, characterized by zero gradients in all but one direction. Agnostic to the nature of the TS and computationally economic, the protocol can be readily automated and routinely used for mechanistic reaction studies.

## Full-text entities

- **Chemicals:** enediyne (MESH:D053281)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11312657/full.md

## References

54 references — full list in the complete paper: https://tomesphere.com/paper/PMC11312657/full.md

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Source: https://tomesphere.com/paper/PMC11312657