# Going fishing: how to get what you want from a fungal genetic screen

**Authors:** Teresa R. O'Meara

PMC · DOI: 10.1128/msphere.00638-23 · mSphere · 2024-07-03

## TL;DR

This mini-review discusses how to design and analyze successful fungal genetic and chemical screens to avoid being a 'fishing expedition'.

## Contribution

The paper provides teaching insights and practical principles for conducting effective fungal genetic screens.

## Key findings

- Well-designed screens can lead to new discoveries and serve as strong starting points for scientific research.
- The setup and analysis of screens are crucial in determining their usefulness and avoiding common pitfalls.
- Recent fungal screens are highlighted as examples of successful approaches.

## Abstract

Five years ago, as I was starting my lab, I wrote about two functional genomic screens in fungi that had inspired me (mSphere 4:e00299-19, https://doi.org/10.1128/mSphere.00299-19). Now, I want to discuss some of the principles and questions that I ask myself and my students as we embark on our own screens. A good screen, whether it is a genetic or chemical screen, can be the starting point for new discovery and an excellent basis for the beginning of a scientific research project. However, screens are often criticized for being “fishing expeditions.” To stretch this metaphor to the extreme, this is because people are worried that we do not know how to fish, that we will come home without any fish, bring home the wrong fish, or not know what to do with a fish if we caught it. How you set up the screen and analyze the results determines whether the screen will be useful. In this mini-review, and in the spirit of teaching a scientist to fish, I will discuss recent excellent fungal genetic and chemical screens that illustrate some of the key aspects of a successful screen.

## Full-text entities

- **Genes:** Aldr5 (aldehyde reductase 5) [NCBI Gene 109855] {aka Ahr-1}, Sult1c1 (sulfotransferase family, cytosolic, 1C, member 1) [NCBI Gene 20888] {aka (PST)G, P-SULT, ST1C1, Stp2, Sult1a2, mOLFST}, Igha (immunoglobulin heavy constant alpha) [NCBI Gene 238447] {aka IgA, Igh-2}, Nrg1 (neuregulin 1) [NCBI Gene 211323] {aka 6030402G23Rik, ARIA, D230005F13Rik, GGF, GGFII, HRG}
- **Diseases:** MAPPING OF HITS (MESH:C535477), inflammation (MESH:D007249), defects (MESH:D000013), infection (MESH:D007239), fungal (MESH:D009181), FOLLOW-UP (MESH:C537491), cystic fibrosis (MESH:D003550)
- **Chemicals:** melanin (MESH:D008543), polystyrene (MESH:D011137), fluconazole (MESH:D015725), EMS (-), LPS (MESH:D008070)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Clavispora lusitaniae (species) [taxon 36911], Aspergillus fumigatus (species) [taxon 746128], Candidozyma auris (species) [taxon 498019], Schizosaccharomyces pombe (fission yeast, species) [taxon 4896], Nakaseomyces glabratus (species) [taxon 5478], Cryptococcus neoformans (Cryptococcus neoformans serotype A, species) [taxon 5207], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Homo sapiens (human, species) [taxon 9606], Candida albicans (species) [taxon 5476]
- **Cell lines:** C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU)

## Full text

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## Figures

2 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11287994/full.md

## References

52 references — full list in the complete paper: https://tomesphere.com/paper/PMC11287994/full.md

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Source: https://tomesphere.com/paper/PMC11287994