# Structure and function of a ligand-free GPCR-Gαβγ intermediate complex

**Authors:** Maxine Bi, Xudong Wang, Jinan Wang, Jun Xu, Wenkai Sun, Victor Ayo Adediwura, Yinglong Miao, Yifan Cheng, Libin Ye

PMC · DOI: 10.21203/rs.3.rs-4566652/v1 · Research Square · 2024-06-27

## TL;DR

Scientists discovered a new intermediate complex in GPCR signaling using cryo-EM and simulations, revealing how it initiates nucleotide exchange before full activation.

## Contribution

The study reveals the structure and function of a ligand-free GPCR-Gαβγ intermediate complex and its role in nucleotide exchange.

## Key findings

- The intermediate GPCR-Gαsβγ complex structure was determined at 2.8 Å resolution using cryo-EM.
- The intermediate complex initiates nucleotide exchange without progressing to full activation.
- MD simulations confirmed the partial opening of the Gα's α-helical domain during this process.

## Abstract

Unraveling the signaling roles of intermediate complexes is pivotal for G protein-coupled receptor (GPCR) drug development. Despite hundreds of GPCR-Gαβγ structures, these snapshots primarily capture the fully activated complex. Consequently, the functions of intermediate GPCR-G protein complexes remain elusive. Guided by a conformational landscape visualized via 19F quantitative NMR and molecular dynamics (MD) simulation, we determined the structure of an intermediate GPCR-mini-Gαsβγ complex at 2.8 Å using cryo-EM, by blocking its transition to the fully activated complex. Furthermore, we presented direct evidence that the intermediate complex initiates a rate-limited nucleotide exchange without progressing to the fully activated complex, in which the α-helical domain (AHD) of the Gα is partially open engaged by a second nucleotide. Our MD simulation supported the pose of the AHD domain. These advances bridge a significant gap in our understanding the complexity of GPCR signaling.

## Linked entities

- **Proteins:** FZD4 (frizzled class receptor 4), AGA (aspartylglucosaminidase), GAST (gastrin), CFB (complement factor B), JAG1 (jagged canonical Notch ligand 1)

## Full-text entities

- **Genes:** SUCLG1 (succinate-CoA ligase GDP/ADP-forming subunit alpha) [NCBI Gene 8802] {aka GALPHA, MTDPS9, SUCLA1}

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11230506/full.md

## References

66 references — full list in the complete paper: https://tomesphere.com/paper/PMC11230506/full.md

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Source: https://tomesphere.com/paper/PMC11230506