# SMYD3 Controls Ciliogenesis by Regulating Distinct Centrosomal Proteins and Intraflagellar Transport Trafficking

**Authors:** Ewud Agborbesong, Julie Xia Zhou, Hongbing Zhang, Linda Xiaoyan Li, Peter C. Harris, James P. Calvet, Xiaogang Li

PMC · DOI: 10.3390/ijms25116040 · International Journal of Molecular Sciences · 2024-05-30

## TL;DR

SMYD3 helps form primary cilia by regulating key proteins and transport processes, which is important for understanding ciliopathies.

## Contribution

SMYD3 is newly identified as a regulator of ciliogenesis through direct and indirect mechanisms.

## Key findings

- SMYD3 is a novel component of the distal appendage and is required for centriolar appendage assembly.
- Loss of SMYD3 leads to fewer ciliated cells and shorter cilia.
- SMYD3 regulates centrosome proteins and intraflagellar transport proteins crucial for cilia formation.

## Abstract

The primary cilium is a microtubule-based sensory organelle that plays a critical role in signaling pathways and cell cycle progression. Defects in the structure and/or function of the primary cilium result in developmental diseases collectively known as ciliopathies. However, the constituents and regulatory mechanisms of the primary cilium are not fully understood. In recent years, the activity of the epigenetic modifier SMYD3 has been shown to play a key role in the regulation of cell cycle progression. However, whether SMYD3, a histone/lysine methyltransferase, contributes to the regulation of ciliogenesis remains unknown. Here, we report that SMYD3 drives ciliogenesis via the direct and indirect regulation of cilia-associated components. We show that SMYD3 is a novel component of the distal appendage and is required for centriolar appendage assembly. The loss of SMYD3 decreased the percentage of ciliated cells and resulted in the formation of stumpy cilia. We demonstrated that SMYD3 modulated the recruitment of centrosome proteins (Cep164, Fbf1, Ninein, Ttbk2 and Cp110) and the trafficking of intraflagellar transport proteins (Ift54 and Ift140) important for cilia formation and maintenance, respectively. In addition, we showed that SMYD3 regulated the transcription of cilia genes and bound to the promoter regions of C2cd3, Cep164, Ttbk2, Dync2h1 and Cp110. This study provides insights into the role of SMYD3 in cilia biology and suggests that SMYD3-mediated cilia formation/function may be relevant for cilia-dependent signaling in ciliopathies.

## Linked entities

- **Genes:** SMYD3 (SET and MYND domain containing 3) [NCBI Gene 64754], CEP164 (centrosomal protein 164) [NCBI Gene 22897], FBF1 (Fas binding factor 1) [NCBI Gene 85302], LOC110854702 (uncharacterized LOC110854702) [NCBI Gene 110854702], TTBK2 (tau tubulin kinase 2) [NCBI Gene 146057], CCP110 (centriolar coiled-coil protein 110) [NCBI Gene 9738], IFT54 (intraflagellar transport 54) [NCBI Gene 26146], IFT140 (intraflagellar transport 140) [NCBI Gene 9742], C2CD3 (C2 domain containing 3 centriole elongation regulator) [NCBI Gene 26005], DYNC2H1 (dynein cytoplasmic 2 heavy chain 1) [NCBI Gene 79659]
- **Proteins:** SMYD3 (SET and MYND domain containing 3), CEP164 (centrosomal protein 164), FBF1 (Fas binding factor 1), LOC110854702 (uncharacterized LOC110854702), TTBK2 (tau tubulin kinase 2), CCP110 (centriolar coiled-coil protein 110), IFT54 (intraflagellar transport 54), IFT140 (intraflagellar transport 140)
- **Diseases:** ciliopathies (MONDO:0005308)

## Full-text entities

- **Genes:** DYNC2H1 (dynein cytoplasmic 2 heavy chain 1) [NCBI Gene 79659] {aka ATD3, DHC1b, DHC2, DNCH2, DYH1B, SRPS2B}, SMYD3 (SET and MYND domain containing 3) [NCBI Gene 64754] {aka KMT3E, ZMYND1, ZNFN3A1, bA74P14.1}, CCP110 (centriolar coiled-coil protein 110) [NCBI Gene 9738] {aka CP110, Cep110}, C2CD3 (C2 domain containing 3 centriole elongation regulator) [NCBI Gene 26005] {aka OFD14}, NIN (ninein) [NCBI Gene 51199] {aka SCKL7}, TTBK2 (tau tubulin kinase 2) [NCBI Gene 146057] {aka SCA11, TTBK}, IFT54 (intraflagellar transport 54) [NCBI Gene 26146] {aka CFAP116, FAP116, MIP-T3, MIPT3, SLSN9, TRAF3IP1}, CEP164 (centrosomal protein 164) [NCBI Gene 22897] {aka NPHP15}, IFT140 (intraflagellar transport 140) [NCBI Gene 9742] {aka CED5, MZSDS, PKD9, RP80, SRTD9, WDTC2}, FBF1 (Fas binding factor 1) [NCBI Gene 85302] {aka Alb, FBF-1}
- **Diseases:** developmental diseases (MESH:D001848), ciliopathies (MESH:D000072661)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11172885/full.md

## References

40 references — full list in the complete paper: https://tomesphere.com/paper/PMC11172885/full.md

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Source: https://tomesphere.com/paper/PMC11172885