# Deciphering vesicle-assisted transport mechanisms in cytoplasm to cilium trafficking

**Authors:** Mark Tingey, Andrew Ruba, Zechang Jiang, Weidong Yang

PMC · DOI: 10.3389/fncel.2024.1379976 · Frontiers in Cellular Neuroscience · 2024-05-27

## TL;DR

This paper reviews how vesicles help transport materials to the cilium, a cell structure important for signaling, using advanced imaging techniques.

## Contribution

The paper synthesizes recent findings on vesicle-assisted transport mechanisms in ciliary trafficking, integrating them with traditional intraflagellar transport models.

## Key findings

- High-speed super-resolution microscopy reveals dynamic vesicle movement in live cilia.
- Electron microscopy data show specific spatial distribution patterns of vesicles in cilia.
- The study proposes an integrated model combining IFT and VAT for ciliary transport.

## Abstract

The cilium, a pivotal organelle crucial for cell signaling and proper cell function, relies on meticulous macromolecular transport from the cytoplasm for its formation and maintenance. While the intraflagellar transport (IFT) pathway has traditionally been the focus of extensive study concerning ciliogenesis and ciliary maintenance, recent research highlights a complementary and alternative mechanism—vesicle-assisted transport (VAT) in cytoplasm to cilium trafficking. Despite its potential significance, the VAT pathway remains largely uncharacterized. This review explores recent studies providing evidence for the dynamics of vesicle-related diffusion and transport within the live primary cilium, employing high-speed super-resolution light microscopy. Additionally, we analyze the spatial distribution of vesicles in the cilium, mainly relying on electron microscopy data. By scrutinizing the VAT pathways that facilitate cargo transport into the cilium, with a specific emphasis on recent advancements and imaging data, our objective is to synthesize a comprehensive model of ciliary transport through the integration of IFT-VAT mechanisms.

## Full-text entities

- **Genes:** Htr6 (5-hydroxytryptamine (serotonin) receptor 6) [NCBI Gene 15565] {aka 5-HT6}, TMEM107 (transmembrane protein 107) [NCBI Gene 84314] {aka GRVS638, JBTS29, MKS13, PRO1268}, KIF3B (kinesin family member 3B) [NCBI Gene 9371] {aka FLA8, HH0048, KLP-11, OTSC12, RP89}, RAB3IP (RAB3A interacting protein) [NCBI Gene 117177] {aka RABIN3, RABIN8}, SST (somatostatin) [NCBI Gene 6750] {aka SMST, SST1}, MKS1 (MKS transition zone complex subunit 1) [NCBI Gene 54903] {aka BBS13, JBTS28, MES, MKS, POC12}, ARRB1 (arrestin beta 1) [NCBI Gene 408] {aka ARB1, ARR1}, TMEM67 (transmembrane protein 67) [NCBI Gene 91147] {aka JBTS6, MECKELIN, MKS3, NPHP11, TNEM67}, IFT25 (intraflagellar transport 25) [NCBI Gene 51668] {aka C1orf41, CFAP232, FAP232, HSPB11, HSPCO34, PP25}, LTB4R (leukotriene B4 receptor) [NCBI Gene 1241] {aka BLT1, BLTR, CMKRL1, GPR16, LTB4R1, LTBR1}, B9D1 (B9 domain containing 1) [NCBI Gene 27077] {aka B9, EPPB9, JBTS27, MKS9, MKSR-1, MKSR1}, KIF3A (kinesin family member 3A) [NCBI Gene 11127] {aka FLA10, KLP-20}, RAB8A (RAB8A, member RAS oncogene family) [NCBI Gene 4218] {aka MEL, RAB8}, NUP88 (nucleoporin 88) [NCBI Gene 4927] {aka FADS4}, TCTN1 (tectonic family member 1) [NCBI Gene 79600] {aka JBTS13, TECT1}, Ift43 (intraflagellar transport 43) [NCBI Gene 76411] {aka 1700019E19Rik}, CEP290 (centrosomal protein 290) [NCBI Gene 80184] {aka 3H11Ag, BBS14, CT87, JBTS5, LCA10, MKS4}, NUP62 (nucleoporin 62) [NCBI Gene 23636] {aka IBSN, SNDI, p62}, Rab8a (RAB8A, member RAS oncogene family) [NCBI Gene 17274] {aka Mel}, KIFAP3 (kinesin associated protein 3) [NCBI Gene 22920] {aka FLA3, KAP-1, KAP-3, KAP3, SMAP, Smg-GDS}, ARL6 (ARF like GTPase 6) [NCBI Gene 84100] {aka BBS3, RP55}, BBS5 (Bardet-Biedl syndrome 5) [NCBI Gene 129880], BBS2 (Bardet-Biedl syndrome 2) [NCBI Gene 583] {aka BBS, RP74}, BBS9 (Bardet-Biedl syndrome 9) [NCBI Gene 27241] {aka B1, C18, D1, PTHB1}, KIF17 (kinesin family member 17) [NCBI Gene 57576] {aka KIF17B, KIF3X, KLP-2, OSM-3}, NUP160 (nucleoporin 160) [NCBI Gene 23279] {aka NPHS19}, PKD2 (polycystin 2, transient receptor potential cation channel) [NCBI Gene 5311] {aka APKD2, PC2, PKD4, Pc-2, TRPP2}, TCTN2 (tectonic family member 2) [NCBI Gene 79867] {aka C12orf38, JBTS24, MKS8, TECT2}, SHH (sonic hedgehog signaling molecule) [NCBI Gene 6469] {aka HHG1, HLP3, HPE3, MCOPCB5, SMMCI, ShhNC}, Lhx2 (LIM homeobox protein 2) [NCBI Gene 16870] {aka LH2A, Lh-2, Lim2, ap, apterous}, CC2D2A (coiled-coil and C2 domain containing 2A) [NCBI Gene 57545] {aka COACH2, JBTS9, MKS6, RP93}, Sstr3 (somatostatin receptor 3) [NCBI Gene 20607] {aka Smstr-3, Smstr3, sst3}, B9D2 (B9 domain containing 2) [NCBI Gene 80776] {aka ICIS-1, JBTS34, MKS10, MKSR-2, MKSR2}, IQCB1 (IQ motif containing B1) [NCBI Gene 9657] {aka NPHP5, PIQ, SLSN5}, Ift20 (intraflagellar transport 20) [NCBI Gene 55978] {aka 0610009H04Rik, mIFT20}, AGFG2 (ArfGAP with FG repeats 2) [NCBI Gene 3268] {aka HRBL, RABR}, NPHP1 (nephrocystin 1) [NCBI Gene 4867] {aka JBTS4, NPH1, SLSN1}, TMEM231 (transmembrane protein 231) [NCBI Gene 79583] {aka ALYE870, JBTS20, MKS11, PRO1886}, RAB11A (RAB11A, member RAS oncogene family) [NCBI Gene 8766] {aka YL8}, BBIP1 (BBSome interacting protein 1) [NCBI Gene 92482] {aka BBIP10, BBS18, NCRNA00081, bA348N5.3}, BBS1 (Bardet-Biedl syndrome 1) [NCBI Gene 582] {aka BBS2L2}, ARL13B (ARF like GTPase 13B) [NCBI Gene 200894] {aka ARL2L1, JBTS8}, RPGRIP1L (RPGRIP1 like) [NCBI Gene 23322] {aka COACH3, CORS3, FTM, JBTS7, MKS5, NPHP8}, NUP205 (nucleoporin 205) [NCBI Gene 23165] {aka C7orf14, NPHS13}, NPHP4 (nephrocystin 4) [NCBI Gene 261734] {aka POC10, SLSN4}, NUP85 (nucleoporin 85) [NCBI Gene 79902] {aka FROUNT, NPHS17, Nup75}, NUP98 (nucleoporin 98 and 96 precursor) [NCBI Gene 4928] {aka ADIR2, NUP196, NUP96, Nup98-96}, NUP155 (nucleoporin 155) [NCBI Gene 9631] {aka ATFB15, N155}, NUP43 (nucleoporin 43) [NCBI Gene 348995] {aka bA350J20.1, p42}, CNGB1 (cyclic nucleotide gated channel subunit beta 1) [NCBI Gene 1258] {aka CNCG2, CNCG3L, CNCG4, CNG4, CNGB1B, GAR1}, CTNNB1 (catenin beta 1) [NCBI Gene 1499] {aka CTNNB, EVR7, MRD19, NEDSDV, armadillo}, Nphp4 (nephronophthisis 4 (juvenile) homolog (human)) [NCBI Gene 260305] {aka 4930564O18Rik, nmf192}, ZNF423 (zinc finger protein 423) [NCBI Gene 23090] {aka Ebfaz, JBTS19, NPHP14, OAZ, Roaz, ZFP423}, IFT27 (intraflagellar transport 27) [NCBI Gene 11020] {aka BBS19, CFAP156, FAP156, RABL4, RAYL}, NUP133 (nucleoporin 133) [NCBI Gene 55746] {aka GAMOS8, NPHS18, hNUP133}, RHO (rhodopsin) [NCBI Gene 6010] {aka CSNBAD1, OPN2, RP4}, TMEM216 (transmembrane protein 216) [NCBI Gene 51259] {aka HSPC244, RP98}, INPP5E (inositol polyphosphate-5-phosphatase E) [NCBI Gene 56623] {aka CORS1, CPD4, JBTS1, MORMS, PPI5PIV, pharbin}, TMEM237 (transmembrane protein 237) [NCBI Gene 65062] {aka ALS2CR4, JBTS14}
- **Diseases:** polydactyly (MESH:D017689), intellectual disability (MESH:D008607), Alzheimer's Disease (MESH:D000544), BBS (MESH:D020788), neurodegenerative diseases (MESH:D019636), laterality defects (MESH:C563391), recessive Mendelian disorder (MESH:D030342), kidney anomalies (MESH:D007674), Joubert Syndrome (MESH:C536293), cancers (MESH:D009369), ciliopathies (MESH:D000072661), morbid obesity (MESH:D009767), anosmia (MESH:D000857), genital malformation (MESH:D000091662), retinal degeneration (MESH:D012162), skeletal abnormalities (MESH:D009139), obesity (MESH:D009765), Parkinson's Disease (MESH:D010300), OPC (MESH:C564935), hearing loss (MESH:D034381), Meckel-Gruber syndrome (MESH:C536133), neurological diseases (MESH:D020271)
- **Chemicals:** luminal (MESH:D010634), AF647 (MESH:C569686), AP (MESH:D000667), GCA (MESH:C539165), lipid (MESH:D008055), Golgicide (-), rapamycin (MESH:D020123)
- **Species:** Rattus norvegicus (brown rat, species) [taxon 10116], Oryctolagus cuniculus (domestic rabbit, species) [taxon 9986], C. elegans [taxon 328850], Chlamydomonas reinhardtii (species) [taxon 3055], Trypanosoma brucei (species) [taxon 5691], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** phenylalanine-glycine
- **Cell lines:** NIH-3T3 — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_0594)

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11163138/full.md

## References

174 references — full list in the complete paper: https://tomesphere.com/paper/PMC11163138/full.md

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Source: https://tomesphere.com/paper/PMC11163138