# Comparative Genome-Wide Alternative Splicing Analysis between Preadipocytes and Adipocytes

**Authors:** Zhongyi Hou, Xin Li, Maosheng Xu, Shengbo Meng, Huifen Xu, Ming Li, Hanfang Cai

PMC · DOI: 10.3390/genes15050640 · Genes · 2024-05-18

## TL;DR

This study compares alternative splicing in preadipocytes and adipocytes to identify genes and pathways involved in fat cell development.

## Contribution

The study provides new insights into alternative splicing patterns during adipocyte differentiation.

## Key findings

- Skipped exons were the most common type of alternative splicing observed.
- 641 differentially spliced genes were identified and linked to 279 enriched pathways.
- RNA-seq results suggest these genes may play roles in adipocyte generation and differentiation.

## Abstract

Alternative splicing is a ubiquitous regulatory mechanism in gene expression that allows a single gene to generate multiple messenger RNAs (mRNAs). Adipocyte development is regulated by many processes, and recent studies have found that splicing factors also play an important role in adipogenic development. In the present study, we further investigated the differences in selective shearing during different periods of adipocyte differentiation. We identified five alternative splicing types including skipped exon, mutually exclusive exon, Alternative 5′ splice site, Alternative 3′ splice site, and Retained intron, with skipped exons being the most abundant type of selective shearing. In total, 641 differentially expressed selective shearing genes were obtained, enriched in 279 pathways, from which we selected and verified the accuracy of the sequencing results. Overall, RNA-seq revealed changes in the splicing and expression levels of these new candidate genes between precursor adipocytes and adipocytes, suggesting that they may be involved in adipocyte generation and differentiation.

## Full-text entities

- **Genes:** INS (insulin) [NCBI Gene 280829], SRSF5 (serine and arginine rich splicing factor 5) [NCBI Gene 510474] {aka SFRS5}, SRSF10 (serine and arginine rich splicing factor 10) [NCBI Gene 768310] {aka FUSIP1, SFRS13A}, SF3B1 (splicing factor 3b subunit 1) [NCBI Gene 510177], ACTBP (actin beta pseudogene) [NCBI Gene 281594], POLR2D (RNA polymerase II subunit D) [NCBI Gene 617422], RBM4 (RNA binding motif protein 4) [NCBI Gene 767937], TPM1 (tropomyosin 1) [NCBI Gene 7168] {aka C15orf13, CMD1Y, CMH3, HEL-S-265, HTM-alpha, LVNC9}, RBM6 (RNA binding motif protein 6) [NCBI Gene 100296443], CREB1 (cAMP responsive element binding protein 1) [NCBI Gene 1385] {aka CREB, CREB-1}, IRAK4 (interleukin 1 receptor associated kinase 4) [NCBI Gene 533692] {aka IRAK-4}, HNRNPC (heterogeneous nuclear ribonucleoprotein C) [NCBI Gene 510852] {aka HNRPC}, MAPK4 (mitogen-activated protein kinase 4) [NCBI Gene 529183], PNLDC1 (PARN like ribonuclease domain containing exonuclease 1) [NCBI Gene 154197] {aka HsPNLDC1, SPGF57, Trimmer}, LPIN1 (lipin 1) [NCBI Gene 537224] {aka lipin1}, ESRP1 (epithelial splicing regulatory protein 1) [NCBI Gene 538640] {aka RBM35A}, SRSF3 (serine and arginine rich splicing factor 3) [NCBI Gene 540276] {aka SFRS3}, CD47 (CD47 molecule) [NCBI Gene 282661] {aka IAP}
- **Diseases:** lung cancer (MESH:D008175), gastric cancer (MESH:D013274), prostate cancer (MESH:D011471), neurodegenerative and neurological diseases (MESH:D020271), Endocrine (MESH:D004700), injury to people or property (MESH:C000719191), inflammation (MESH:D007249), colorectal cancer (MESH:D015179), cancer (MESH:D009369)
- **Chemicals:** DMEM (-), CO2 (MESH:D002245), dexamethasone (MESH:D003907), poly(A) (MESH:D011061), LPS (MESH:D008070), dGTP (MESH:C029603), acid (MESH:D000143), water (MESH:D014867), agarose (MESH:D012685), dCTP (MESH:C024107), cholesterol (MESH:D002784), m6A (MESH:C005955), dATP (MESH:C026600), 3-isobutyl-1-methylxanthine (MESH:D015056), F12 (MESH:C007782), U (MESH:D014501), amino acids (MESH:D000596), Trizol (MESH:C411644), dUTP (MESH:C027078)
- **Species:** Bos taurus (bovine, species) [taxon 9913], Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11121090/full.md

## References

32 references — full list in the complete paper: https://tomesphere.com/paper/PMC11121090/full.md

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Source: https://tomesphere.com/paper/PMC11121090