# A simple, robust, broadly applicable insertion mutagenesis method to create random fluorescent protein: target protein fusions

**Authors:** Andrew Pike, Cassandra Pietryski, Padraig Deighan, Jason Kuehner, Derek Lau, Anupama Seshan, Paul E March

PMC · DOI: 10.1093/g3journal/jkae036 · G3: Genes|Genomes|Genetics · 2024-02-16

## TL;DR

This paper introduces a simple and reliable method to create random fluorescent protein fusions with target proteins using transposition and screening in E. coli.

## Contribution

A novel, broadly applicable insertion mutagenesis method that enables the creation of fluorescent protein fusions without complex procedures.

## Key findings

- The method produces in-frame fusion proteins from 8 different target genes.
- Fluorescent colonies can be efficiently screened using high-density plating.
- The method is robust enough to be used in undergraduate laboratory classes.

## Abstract

A simple, broadly applicable method was developed using an in vitro transposition reaction followed by transformation into Escherichia coli and screening plates for fluorescent colonies. The transposition reaction catalyzes the random insertion of a fluorescent protein open reading frame into a target gene on a plasmid. The transposition reaction is employed directly in an E. coli transformation with no further procedures. Plating at high colony density yields fluorescent colonies. Plasmids purified from fluorescent colonies contain random, in-frame fusion proteins into the target gene. The plate screen also results in expressed, stable proteins. A large library of chimeric proteins was produced, which was useful for downstream research. The effect of using different fluorescent proteins was investigated as well as the dependence of the linker sequence between the target and fluorescent protein open reading frames. The utility and simplicity of the method were demonstrated by the fact that it has been employed in an undergraduate biology laboratory class without failure over dozens of class sections. This suggests that the method will be useful in high-impact research at small liberal arts colleges with limited resources. However, in-frame fusion proteins were obtained from 8 different targets suggesting that the method is broadly applicable in any research setting.

Graphical Abstract

## Linked entities

- **Species:** Escherichia coli (taxon 562)

## Full-text entities

- **Species:** Escherichia coli (E. coli, species) [taxon 562]

## Full text

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## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11075570/full.md

## References

27 references — full list in the complete paper: https://tomesphere.com/paper/PMC11075570/full.md

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Source: https://tomesphere.com/paper/PMC11075570