# A1CF Binding to the p65 Interaction Site on NKRF Decreased IFN-β Expression and p65 Phosphorylation (Ser536) in Renal Carcinoma Cells

**Authors:** Yamin Liu, Jieru Yang, Dunchu Weng, Yajun Xie

PMC · DOI: 10.3390/ijms25073576 · International Journal of Molecular Sciences · 2024-03-22

## TL;DR

This study shows that A1CF binds to NKRF in kidney cancer cells, reducing IFN-β and p65 phosphorylation, which may promote tumor growth.

## Contribution

The study reveals a novel RNA-independent role of A1CF in modulating p65 phosphorylation and IFN-β levels through direct interaction with NKRF in renal carcinoma.

## Key findings

- A1CF binds to NKRF independently of RNA or DNA and modulates p65(Ser536) phosphorylation and IFN-β levels.
- A1CF promotes cell proliferation and tumor progression in renal carcinoma cells.
- High A1CF expression in patient samples correlates with low p65 phosphorylation and IFN-β levels in renal cancer tissues.

## Abstract

Apobec-1 complementation factor (A1CF) functions as an RNA-binding cofactor for APO-BEC1-mediated C-to-U conversion during RNA editing and as a hepatocyte-specific regulator in the alternative pre-mRNA splicing of metabolic enzymes. Its role in RNA editing has not been clearly established. Western blot, co-immunoprecipitation (Co-IP), immunofluorescence (IF), methyl thiazolyl tetrazolium (MTT), and 5-ethynyl-2′-deoxyuridine (EdU) assays were used to examine the role of A1CF beyond RNA editing in renal carcinoma cells. We demonstrated that A1CF interacts with NKRF, independent of RNA and DNA, without affecting its expression or nuclear translocation; however, it modulates p65(Ser536) phosphorylation and IFN-β levels. Truncation of A1CF or deletion on NKRF revealed that the RRM1 domain of A1CF and the p65 binding motif of NKRF are required for their interaction. Deletion of RRM1 on A1CF abrogates NKRF binding, and the decrease in IFN-β expression and p65(Ser536) phosphorylation was induced by A1CF. Moreover, full-length A1CF, but not an RRM1 deletion mutant, promoted cell proliferation in renal carcinoma cells. Perturbation of A1CF levels in renal carcinoma cells altered anchorage-independent growth and tumor progression in nude mice. Moreover, p65(Ser536) phosphorylation and IFN-β expression were lower, but ki67 was higher in A1CF-overexpressing tumor tissues of a xenograft mouse model. Notably, primary and metastatic samples from renal cancer patients exhibited high A1CF expression, low p65(Ser536) phosphorylation, and decreased IFN-β levels in renal carcinoma tissues compared with the corresponding paracancerous tissues. Our results indicate that A1CF-decreased p65(Ser536) phosphorylation and IFN-β levels may be caused by A1CF competitive binding to the p65-combined site on NKRF and demonstrate the direct binding of A1CF independent of RNA or DNA in signal pathway regulation and tumor promotion in renal carcinoma cells.

## Linked entities

- **Genes:** A1CF (APOBEC1 complementation factor) [NCBI Gene 29974], NKRF (NFKB repressing factor) [NCBI Gene 55922], RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970], IFNB1 (interferon beta 1) [NCBI Gene 3456], Mki67 (antigen identified by monoclonal antibody Ki 67) [NCBI Gene 17345]
- **Proteins:** A1CF (APOBEC1 complementation factor), NKRF (NFKB repressing factor), RELA (RELA proto-oncogene, NF-kB subunit), IFNB1 (interferon beta 1)
- **Chemicals:** 5-ethynyl-2′-deoxyuridine (PubChem CID 472172)
- **Diseases:** renal carcinoma (MONDO:0005206)

## Full-text entities

- **Genes:** APOBEC1 (apolipoprotein B mRNA editing enzyme catalytic subunit 1) [NCBI Gene 339] {aka APO1, APOBEC-1, BEDP, CDAR1, HEPR}, RRM1 (ribonucleotide reductase catalytic subunit M1) [NCBI Gene 6240] {aka PEOB6, R1, RIR1, RR1}, A1cf (APOBEC1 complementation factor) [NCBI Gene 69865] {aka 1810073H04Rik, 9130016M20Rik, ACF64, ACF65, ASP, Acf}, A1CF (APOBEC1 complementation factor) [NCBI Gene 29974] {aka ACF, ACF64, ACF65, APOBEC1CF, ASP}, IFNB1 (interferon beta 1) [NCBI Gene 3456] {aka IFB, IFF, IFN-beta, IFNB}, NKRF (NFKB repressing factor) [NCBI Gene 55922] {aka ITBA4, NRF, XTBD3}, RELA (RELA proto-oncogene, NF-kB subunit) [NCBI Gene 5970] {aka AIF3BL3, CMCU, NFKB3, p65}, Nkrf (NF-kappaB repressing factor) [NCBI Gene 77286] {aka 9430034D17Rik}
- **Diseases:** Renal Carcinoma (MESH:D002292), renal cancer (MESH:D007680), tumor (MESH:D009369)
- **Chemicals:** 5-ethynyl-2'-deoxyuridine (MESH:C031086), MTT (-)
- **Species:** Mus musculus (house mouse, species) [taxon 10090], Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC11011687/full.md

## References

68 references — full list in the complete paper: https://tomesphere.com/paper/PMC11011687/full.md

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Source: https://tomesphere.com/paper/PMC11011687