# Active site remodeling in tumor-relevant IDH1 mutants drives distinct kinetic features and potential resistance mechanisms

**Authors:** Matthew Mealka, Nicole A. Sierra, Diego Avellaneda Matteo, Elene Albekioni, Rachel Khoury, Timothy Mai, Brittany M. Conley, Nalani J. Coleman, Kaitlyn A. Sabo, Elizabeth A. Komives, Andrey A. Bobkov, Andrew L. Cooksy, Steve Silletti, Jamie M. Schiffer, Tom Huxford, Christal D. Sohl

PMC · DOI: 10.21203/rs.3.rs-3889456/v1 · Research Square · 2024-02-23

## TL;DR

This paper explores how different mutations in the IDH1 enzyme affect its activity and may lead to cancer and resistance to drugs.

## Contribution

The study reveals how the R132Q IDH1 mutant maintains conventional and neomorphic activity through active site remodeling.

## Key findings

- The R132Q mutant IDH1 has an active site conformation optimized for catalysis and substrate binding.
- Active site remodeling in R132Q may explain resistance to IDH1 inhibitors.
- The findings highlight structural differences between R132Q and R132H mutants.

## Abstract

Mutations in human isocitrate dehydrogenase 1 (IDH1) drive tumor formation in a variety of cancers by replacing its conventional activity with a neomorphic activity that generates an oncometabolite. Little is understood of the mechanistic differences among tumor-driving IDH1 mutants. We previously reported that the R132Q mutant uniquely preserves conventional activity while catalyzing robust oncometabolite production, allowing an opportunity to compare these reaction mechanisms within a single active site. Here, we employed static and dynamic structural methods and found that, compared to R132H, the R132Q active site adopted a conformation primed for catalysis with optimized substrate binding and hydride transfer to drive improved conventional and neomorphic activity over R132H. This active site remodeling revealed a possible mechanism of resistance to selective mutant IDH1 therapeutic inhibitors. This work enhances our understanding of fundamental IDH1 mechanisms while pinpointing regions for improving inhibitor selectivity.

## Linked entities

- **Genes:** IDH1 (isocitrate dehydrogenase (NADP(+)) 1) [NCBI Gene 3417]
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** IDH1 (isocitrate dehydrogenase (NADP(+)) 1) [NCBI Gene 3417] {aka HEL-216, HEL-S-26, IDCD, IDH, IDP, IDPC}
- **Diseases:** cancers (MESH:D009369)
- **Species:** Homo sapiens (human, species) [taxon 9606]
- **Mutations:** R132Q

## Full text

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## Figures

8 figures with captions in the complete paper: https://tomesphere.com/paper/PMC10925425/full.md

## References

66 references — full list in the complete paper: https://tomesphere.com/paper/PMC10925425/full.md

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Source: https://tomesphere.com/paper/PMC10925425