# Mitf regulates gene expression networks implicated in B cell homeostasis, germinal center responses, and tolerance

**Authors:** Abhimanyu Amarnani, Maria Lopez-Ocasio, Ramile Dilshat, Kamala Anumukonda, Jonathan Davila, Nikita Malakhov, Chongmin Huan, Erna Magnusdottir, Eirikur Steingrimsson, Christopher A. Roman

PMC · DOI: 10.3389/fimmu.2024.1339325 · 2024-02-20

## TL;DR

This study shows that the Mitf gene controls B cell behavior and prevents autoimmunity by regulating specific genes and pathways.

## Contribution

The study identifies novel Mitf target genes and clarifies its distinct role from related MiT transcription factors in B cell regulation.

## Key findings

- Mitf deficiency in B cells leads to splenomegaly, autoantibodies, and lupus-like symptoms.
- Mitf regulates genes like Socs6, Isp53, S1pR2, and IgG2b/c involved in B cell cycle and differentiation.
- Mitf null B cells show type I interferon dysregulation not seen in TDN-B cells.

## Abstract

The microphthalmia transcription factor Mitf has been shown to regulate B cell activation and tolerance. However, the underlying B cell-specific mechanisms responsible, and those that distinguish Mitf from closely related Mitf/TFE (MiT) transcription factors Tfe3, Tfeb, and Tfec, remain obscure.

Two complementary mouse models of Mitf and MiT deficiency were used: the Mitfmi-vga9/mi-vga9 systemic loss-of-function mutation, and B-cell specific MiT family inactivation via transgenic expression of a trans-dominant negative (TDN) protein (TDN-B). These models were employed to identify MiT family candidate target genes and pathways.

Both models displayed spontaneous splenomegaly coincident with elevated plasma cell numbers, autoantibody titers, and proteinuria. These abnormalities appeared dependent on T helper cells, but independent of other non-B cell intrinsic effects of systemic Mitf inactivation. MiT inactivation in B cells augmented aspects of lupus-like autoimmune disease on the C57BL/6-Faslpr/lpr background. In both models, RNAseq of ex vivo resting B cells showed transcriptional upregulation of genes that control cell cycle, germinal center responses, and plasma cell differentiation. Among the genes strongly upregulated in both models were Socs6, Isp53 (Baiap1), S1pR2, and IgG2b/c. Mitf null B cells, but not TDN-B cells, showed evidence of type I interferon dysregulation.

These studies clarify Mitf’s role as 1) a key regulator of a B cell intrinsic germinal center program that influences self-tolerance through novel target genes, and 2) a regulator of systemic inflammatory processes that can impact the B cell microenvironment. This distinction of Mitf's function from that of related MiT transcription factors advances our understanding of B cell regulation and autoimmunity.

## Linked entities

- **Genes:** MITF (melanocyte inducing transcription factor) [NCBI Gene 4286], TFE3 (transcription factor binding to IGHM enhancer 3) [NCBI Gene 7030], TFEB (transcription factor EB) [NCBI Gene 7942], TFEC (transcription factor EC) [NCBI Gene 22797], SOCS6 (suppressor of cytokine signaling 6) [NCBI Gene 9306], MAGI1 (membrane associated guanylate kinase, WW and PDZ domain containing 1) [NCBI Gene 9223], S1PR2 (sphingosine-1-phosphate receptor 2) [NCBI Gene 9294]

## Full-text entities

- **Genes:** S1pr2 (sphingosine-1-phosphate receptor 2) [NCBI Gene 14739] {aka 1100001A16Rik, Edg5, Gpcr13, H218, LPb2, S1P2}, Tfe3 (transcription factor E3) [NCBI Gene 209446] {aka F830016E06Rik, Tcfe3, Tfe-3, bHLHe33, mTFE3}, Socs6 (suppressor of cytokine signaling 6) [NCBI Gene 54607] {aka 1500012M23Rik, 5830401B18Rik, Cis4, Cish4, HSPC060, SOCS-4}, Ighg2b (immunoglobulin heavy constant gamma 2B) [NCBI Gene 16016] {aka IgG2b, Igh-3, gamma2b}, Tcf4 (transcription factor 4) [NCBI Gene 21413] {aka 5730422P05Rik, ASP-I2, E2-2, E2.2, ITF-2, ITF-2b}, Tfeb (transcription factor EB) [NCBI Gene 21425] {aka Tcfeb, bHLHe35}, Magi1 (membrane associated guanylate kinase, WW and PDZ domain containing 1) [NCBI Gene 14924] {aka AIP3, BAP1, Baiap1, Gukmi1, MAGI1c, Magi-1}, Mitf (melanogenesis associated transcription factor) [NCBI Gene 17342] {aka BCC2, Bhlhe32, Gsfbcc2, Vitiligo, Wh, bw}, Tfec (transcription factor EC) [NCBI Gene 21426] {aka Tcfec, bHLHe34}, Fas (Fas cell surface death receptor) [NCBI Gene 14102] {aka APO1, APT1, CD95, TNFR6, Tnfrsf6, lpr}
- **Diseases:** microphthalmia transcription (MESH:D008850), splenomegaly (MESH:D013163), proteinuria (MESH:D011507), inflammatory (MESH:D007249), lupus-like autoimmune disease (MESH:D001327), MiT deficiency (MESH:D007153)
- **Species:** Mus musculus (house mouse, species) [taxon 10090]
- **Cell lines:** TDN-B — Mus musculus (Mouse), Spontaneously immortalized cell line (CVCL_4536), C57BL/6 — Mus musculus (Mouse), Transformed cell line (CVCL_C0MU)

## Figures

10 figures with captions in the complete paper: https://tomesphere.com/paper/PMC10912573/full.md

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Source: https://tomesphere.com/paper/PMC10912573