# The Isolation and Characterization of a Novel Psychrotolerant Cellulolytic Bacterium, Microbacterium sp. QXD-8T

**Authors:** Peng An, Changjialian Yang, Wei Li, Dahe Zhao, Hua Xiang

PMC · DOI: 10.3390/microorganisms12020303 · Microorganisms · 2024-01-31

## TL;DR

Scientists discovered a new cold-tolerant bacteria that can break down cellulose, useful for recycling agricultural waste in cold regions.

## Contribution

A novel psychrotolerant cellulolytic species, Microbacterium psychrotolerans, is proposed based on genomic and physiological analyses.

## Key findings

- Strain QXD-8T can grow and degrade cellulose at 15°C, indicating psychrotolerance.
- The bacterium contains genes for GH5, GH6, and GH10 endoglucanases, and GH1, GH3, GH39, and GH116 β-glucosidases.
- Some predicted proteins have signal peptides and transmembrane regions, suggesting extracellular cellulose degradation.

## Abstract

Cellulolytic microorganisms play a crucial role in agricultural waste disposal. Strain QXD-8T was isolated from soil in northern China. Similarity analyses of the 16S rRNA gene, as well as the 120 conserved genes in the whole-genome sequence, indicate that it represents a novel species within the genus Microbacterium. The Microbacterium sp. QXD-8T was able to grow on the CAM plate with sodium carboxymethyl cellulose as a carbon source at 15 °C, forming a transparent hydrolysis circle after Congo red staining, even though the optimal temperature for the growth and cellulose degradation of strain QXD-8T was 28 °C. In the liquid medium, it effectively degraded cellulose and produced reducing sugars. Functional annotation revealed the presence of encoding genes for the GH5, GH6, and GH10 enzyme families with endoglucanase activity, as well as the GH1, GH3, GH39, and GH116 enzyme families with β-glucosidase activity. Additionally, two proteins in the GH6 family, one in the GH10, and two of nine proteins in the GH3 were predicted to contain a signal peptide and transmembrane region, suggesting their potential for extracellularly degrade cellulose. Based on the physiological features of the type strain QXD-8T, we propose the name Microbacterium psychrotolerans for this novel species. This study expands the diversity of psychrotolerant cellulolytic bacteria and provides a potential microbial resource for straw returning in high-latitude areas at low temperatures.

## Linked entities

- **Genes:** 16S rRNA (16S ribosomal RNA) [NCBI Gene 2597965], GH1 (growth hormone 1) [NCBI Gene 100861230], HMX1 (H6 family homeobox 1) [NCBI Gene 396546], GH1 (growth hormone 1) [NCBI Gene 2688], GH3 (glycoside hydrolase) [NCBI Gene 30183616], GH3.9 (putative indole-3-acetic acid-amido synthetase GH3.9) [NCBI Gene 819387]
- **Chemicals:** sodium carboxymethyl cellulose (PubChem CID 6328154), Congo red (PubChem CID 11313)
- **Species:** Microbacterium psychrotolerans (taxon 3068321)

## Full-text entities

- **Genes:** GH1 (growth hormone 1) [NCBI Gene 2688] {aka GH, GH-N, GHB5, GHN, IGHD1A, IGHD1B}
- **Species:** Microbacterium sp. (species) [taxon 51671]
- **Cell lines:** QXD-8T. — Homo sapiens (Human), Colon carcinoma, Cancer cell line (CVCL_2588)

## Full text

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## Figures

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## References

56 references — full list in the complete paper: https://tomesphere.com/paper/PMC10892437/full.md

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Source: https://tomesphere.com/paper/PMC10892437