# Targeting with Structural Analogs of Natural Products the Purine Salvage Pathway in Leishmania (Leishmania) infantum by Computer-Aided Drug-Design Approaches

**Authors:** Haruna Luz Barazorda-Ccahuana, Eymi Gladys Cárcamo-Rodriguez, Angela Emperatriz Centeno-Lopez, Alexsandro Sobreira Galdino, Ricardo Andrez Machado-de-Ávila, Rodolfo Cordeiro Giunchetti, Eduardo Antonio Ferraz Coelho, Miguel Angel Chávez-Fumagalli

PMC · DOI: 10.3390/tropicalmed9020041 · Tropical Medicine and Infectious Disease · 2024-02-03

## TL;DR

This study identifies a natural product analog that may target the purine salvage pathway in Leishmania infantum, offering a potential new treatment for visceral leishmaniasis.

## Contribution

The study proposes a novel compound with dual binding affinity to APRT and ADL proteins in Leishmania, identified via computational drug design.

## Key findings

- An analog of Skimmianine showed good binding affinity to APRT and ADL proteins in Leishmania.
- The compound exhibited no expected toxicity and potential for oral administration.
- Adenylosuccinate lyase (ADL) is highlighted as a significant therapeutic target due to its low homology to human proteins.

## Abstract

Visceral Leishmaniasis (VL) has a high death rate, with 500,000 new cases and 50,000 deaths occurring annually. Despite the development of novel strategies and technologies, there is no adequate treatment for the disease. Therefore, the purpose of this study is to find structural analogs of natural products as potential novel drugs to treat VL. We selected structural analogs from natural products that have shown antileishmanial activities, and that may impede the purine salvage pathway using computer-aided drug-design (CADD) approaches. For these, we started with the vastly studied target in the pathway, the adenine phosphoribosyl transferase (APRT) protein, which alone is non-essential for the survival of the parasite. Keeping this in mind, we search for a substance that can bind to multiple targets throughout the pathway. Computational techniques were used to study the purine salvage pathway from Leishmania infantum, and molecular dynamic simulations were used to gather information on the interactions between ligands and proteins. Because of its low homology to human proteins and its essential role in the purine salvage pathway proteins network interaction, the findings further highlight the significance of adenylosuccinate lyase protein (ADL) as a therapeutic target. An analog of the alkaloid Skimmianine, N,N-diethyl-4-methoxy-1-benzofuran-6-carboxamide, demonstrated a good binding affinity to APRT and ADL targets, no expected toxicity, and potential for oral route administration. This study indicates that the compound may have antileishmanial activity, which was granted in vitro and in vivo experiments to settle this finding in the future.

## Linked entities

- **Chemicals:** Skimmianine (PubChem CID 6760)

## Full-text entities

- **Genes:** APRT (adenine phosphoribosyltransferase) [NCBI Gene 353] {aka AMP, APRTD}
- **Diseases:** death (MESH:D003643), toxicity (MESH:D064420), VL (MESH:D007898)
- **Chemicals:** alkaloid (MESH:D000470), N,N-diethyl-4-methoxy-1-benzofuran-6-carboxamide (-), Skimmianine (MESH:C035932), Purine (MESH:C030985)
- **Species:** Homo sapiens (human, species) [taxon 9606], Leishmania infantum (species) [taxon 5671]

## Full text

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## Figures

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## References

101 references — full list in the complete paper: https://tomesphere.com/paper/PMC10891554/full.md

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Source: https://tomesphere.com/paper/PMC10891554