# CSDE1 Intracellular Distribution as a Biomarker of Melanoma Prognosis

**Authors:** Alberto Indacochea, Tanit Guitart, Aram Boada, Vicente Peg, Ariadna Quer, Hafid Laayouni, Laura Condal, Pablo Espinosa, Jose Luis Manzano, Fátima Gebauer

PMC · DOI: 10.3390/ijms25042319 · International Journal of Molecular Sciences · 2024-02-15

## TL;DR

This study explores how the distribution of a protein called CSDE1 in melanoma cells can predict cancer progression and patient outcomes.

## Contribution

The study introduces a new prognostic biomarker based on the cytoplasmic/nuclear ratio of CSDE1 in melanoma.

## Key findings

- CSDE1 levels decrease with increasing malignancy in melanoma.
- The cytoplasmic/nuclear ratio of CSDE1 correlates with adverse clinical features and progression-free survival.
- CSDE1 distribution dynamics highlight complexities in RNA-binding protein roles in cancer.

## Abstract

RNA-binding proteins are emerging as critical modulators of oncogenic cell transformation, malignancy and therapy resistance. We have previously found that the RNA-binding protein Cold Shock Domain containing protein E1 (CSDE1) promotes invasion and metastasis of melanoma, the deadliest form of skin cancer and also a highly heterogeneous disease in need of predictive biomarkers and druggable targets. Here, we design a monoclonal antibody useful for IHC in the clinical setting and use it to evaluate the prognosis potential of CSDE1 in an exploratory cohort of 149 whole tissue sections including benign nevi and primary tumors and metastasis from melanoma patients. Contrary to expectations for an oncoprotein, we observed a global decrease in CSDE1 levels with increasing malignancy. However, the CSDE1 cytoplasmic/nuclear ratio exhibited a positive correlation with adverse clinical features of primary tumors and emerged as a robust indicator of progression free survival in cutaneous melanoma, highlighting the potential of CSDE1 as a biomarker of prognosis. Our findings provide a novel feature for prognosis assessment and highlight the intricacies of RNA-binding protein dynamics in cancer progression.

## Linked entities

- **Genes:** CSDE1 (cold shock domain containing E1) [NCBI Gene 7812]
- **Proteins:** CSDE1 (cold shock domain containing E1)
- **Diseases:** melanoma (MONDO:0005105), skin cancer (MONDO:0002898)

## Full-text entities

- **Genes:** CSDE1 (cold shock domain containing E1) [NCBI Gene 7812] {aka D1S155E, UNR}, RBMS3 (RNA binding motif single stranded interacting protein 3) [NCBI Gene 27303]
- **Diseases:** cancer (MESH:D009369), metastasis (MESH:D009362), skin cancer (MESH:D012878), cutaneous melanoma (MESH:C562393), benign nevi (MESH:D009506), Melanoma (MESH:D008545)
- **Species:** Homo sapiens (human, species) [taxon 9606]

## Full text

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## Figures

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## References

45 references — full list in the complete paper: https://tomesphere.com/paper/PMC10889260/full.md

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Source: https://tomesphere.com/paper/PMC10889260