# Lack of detection of SARS-CoV-2 in wildlife from Kerala, India in 2020–21

**Authors:** Arun Zachariah, Sajesh P. Krishnankutty, Jishnu Manazhi, Vishnu Omanakuttan, Sam Santosh, Adam Blanchard, Rachael Tarlinton

PMC · DOI: 10.1099/acmi.0.000686.v3 · Access Microbiology · 2024-01-31

## TL;DR

This study found no evidence of SARS-CoV-2 in various wildlife species from Kerala, India, between 2020 and 2021.

## Contribution

The study contributes new geographical data on the absence of SARS-CoV-2 in wildlife in a region with limited prior monitoring.

## Key findings

- SARS-CoV-2 was not detected in lung or gut tissues of 237 wildlife animals from Kerala.
- Testing used both pan-coronavirus and Sarbecovirus-specific PCR methods.
- Species included bats, primates, civets, and big cats, with no positive results.

## Abstract

Spillover of SARS-CoV-2 into a variety of wild and domestic animals has been an ongoing feature of the human pandemic. The establishment of a new reservoir in white-tailed deer in North America and increasing divergence of the viruses circulating in them from those circulating in the human population has highlighted the ongoing risk this poses for global health. Some parts of the world have seen more intensive monitoring of wildlife species for SARS-CoV-2 and related coronaviruses but there are still very large gaps in geographical and species-specific information. This paper reports negative results for SARS-CoV-2 PCR based testing using a pan coronavirus end point RDRP PCR and a Sarbecovirus specific E gene qPCR on lung and or gut tissue from wildlife from the Indian State of Kerala. These animals included: 121 Rhinolophus rouxii (Rufous Horsehoe Bat), six Rhinolophus bedommei (Lesser Woolly Horseshoe Bat), 15 Rossettus leschenaultii (Fulvous Fruit Bat), 47 Macaca radiata (Bonnet macaques), 35 Paradoxurus hermaphroditus (Common Palm Civet), five Viverricula indica (Small Indian Civet), four Herpestes edwardsii (Common Mongoose), ten Panthera tigris (Bengal Tiger), eight Panthera pardus fusca (Indian Leopard), four Prionailurus bengalensis (Leopard cats), two Felis chaus (Jungle cats), two Cuon alpinus (Wild dogs) and one Melursus ursinus (sloth bear).

## Linked entities

- **Diseases:** SARS-CoV-2 (MONDO:0100096)
- **Species:** Rhinolophus rouxii (taxon 89398), Macaca radiata (taxon 9548), Paradoxurus hermaphroditus (taxon 71117), Viverricula indica (taxon 94196), Panthera tigris (taxon 9694), Panthera pardus fusca (taxon 421001), Prionailurus bengalensis (taxon 37029), Felis chaus (taxon 61376), Cuon alpinus (taxon 68730), Melursus ursinus (taxon 9636)

## Full-text entities

- **Species:** Rhinolophus rouxii (species) [taxon 89398], Panthera tigris (tiger, species) [taxon 9694], Odocoileus virginianus (white-tailed deer, species) [taxon 9874], Panthera pardus fusca (subspecies) [taxon 421001], Canis lupus familiaris (dog, subspecies) [taxon 9615], Gammacoronavirus (genus) [taxon 694013], Urva edwardsii (Indian gray mongoose, species) [taxon 39705], Cuon alpinus (dhole, species) [taxon 68730], Felis chaus (jungle cat, species) [taxon 61376], Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049], Homo sapiens (human, species) [taxon 9606], Viverricula indica (small Indian civet, species) [taxon 94196], Sarbecovirus (subgenus) [taxon 2509511], Macaca radiata (bonnet macaque, species) [taxon 9548], Paradoxurus hermaphroditus (Asian palm civet, species) [taxon 71117], Melursus ursinus (sloth bear, species) [taxon 9636], Prionailurus bengalensis (leopard cat, species) [taxon 37029]

## Full text

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## Figures

1 figure with captions in the complete paper: https://tomesphere.com/paper/PMC10866034/full.md

## References

43 references — full list in the complete paper: https://tomesphere.com/paper/PMC10866034/full.md

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Source: https://tomesphere.com/paper/PMC10866034