# An omicron-specific neutralizing antibody test predicts neutralizing activity against XBB 1.5

**Authors:** Stephen Varvel, Marzena Galdzicka, Stephanie Nystrom, Hong Liu, Ge Chen, Izabela Ragan, Shahrokh Shabahang

PMC · DOI: 10.3389/fimmu.2024.1334250 · 2024-01-23

## TL;DR

A new test for omicron-specific antibodies accurately predicts neutralizing activity against the XBB 1.5 variant of SARS-CoV-2.

## Contribution

A flow cytometry-based assay for omicron-specific neutralizing antibodies that predicts activity against newer subvariants like XBB 1.5.

## Key findings

- The omicron FC-NAb test showed strong agreement with the omicron PRNT assay (AUC = 0.97).
- The test strongly predicted XBB 1.5 neutralizing activity (AUC = 0.96, r = 0.83).
- High sensitivity and specificity were observed for both omicron and XBB 1.5 predictions.

## Abstract

Understanding the immune status of an individual using neutralizing antibody testing is complicated by the continued evolution of the SARS-CoV-2 virus. Previous work showed that assays developed against the wildtype strain of SARS-CoV-2 were insufficient predictors of neutralization of omicron variants, thus we developed an omicron-specific flow cytometry-based neutralizing antibody test and performed experiments to assess how well it compared to an omicron-specific PRNT assay (gold standard) and whether it could predict neutralizing activity to more recent omicron subvariants such as XBB.1.5.

Accuracy of a novel flow cytometry-based neutralizing antibody (FC-NAb) assay was determined by comparison with an omicron-specific PRNT assay. A series of samples were evaluated in both the omicron FC-NAb assay and a second test was designed to assess neutralization of XBB.1.5.

Good concordance between the omicron FC-NAb test and the omicron PRNT was demonstrated (AUC = 0.97, p <0.001; sensitivity = 94%, specificity = 100%, PPV = 100%, and NPV = 97%). A strong linear relationship between the omicron FC-NAb and neutralization of XBB1.5 was observed (r = 0.83, p<0.001). Additionally, the omicron FC-NAb test was a very strong predictor of positive XBB1.5 NAb activity (AUC = 0.96, p<0.001; sensitivity = 94%, specificity = 90%, positive predictive value = 90%, and negative predictive values = 94%).

Our data suggest that despite continued evolution of the SARS-CoV-2 spike protein, the omicron FC-NAb assay described here is a good predictor of XBB1.5 neutralizing activity, as evidenced by a strong correlation and good predictive performance characteristics.

## Linked entities

- **Diseases:** SARS-CoV-2 (MONDO:0100096)

## Full-text entities

- **Genes:** PRNT (prion locus lncRNA, testis expressed) [NCBI Gene 149830] {aka M8}
- **Species:** Severe acute respiratory syndrome coronavirus 2 (no rank) [taxon 2697049]

## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC10845052/full.md

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Source: https://tomesphere.com/paper/PMC10845052