# Exploring TRF2-Dependent DNA Distortion Through Single-DNA Manipulation Studies

**Authors:** Xiaodan Zhao, Vinod Kumar Vogirala, Meihan Liu, Yu Zhou, Daniela Rhodes, Sara Sandin, Jie Yan

PMC · DOI: 10.1038/s42003-024-05838-x · Communications Biology · 2024-02-03

## TL;DR

This study reveals how TRF2 interacts with telomeric DNA, showing it can switch between different shapes and bend DNA under tension.

## Contribution

The study identifies TRF2's multiple DNA-binding modes and its role in DNA bending under tension.

## Key findings

- TRF2-DNA complexes can switch between extended and compact conformations.
- TRF2 does not strongly prefer DNA supercoiling chirality under low tension.
- TRF2 induces DNA bending when tension is applied.

## Abstract

TRF2 is a component of shelterin, a telomere-specific protein complex that protects the ends of mammalian chromosomes from DNA damage signaling and improper repair. TRF2 functions as a homodimer and its interaction with telomeric DNA has been studied, but its full-length DNA-binding properties are unknown. This study examines TRF2’s interaction with single-DNA strands and focuses on the conformation of the TRF2-DNA complex and TRF2’s preference for DNA chirality. The results show that TRF2-DNA can switch between extended and compact conformations, indicating multiple DNA-binding modes, and TRF2’s binding does not have a strong preference for DNA supercoiling chirality when DNA is under low tension. Instead, TRF2 induces DNA bending under tension. Furthermore, both the N-terminal domain of TRF2 and the Myb domain enhance its affinity for the telomere sequence, highlighting the crucial role of multivalent DNA binding in enhancing its affinity and specificity for telomere sequence. These discoveries offer unique insights into TRF2’s interaction with telomeric DNA.

Single-molecule DNA manipulations experiments reveal that the TRF2 component of the telomeric-specific complex exhibits multiple DNA-binding modes on telomeric DNA that can switch between extended and compact conformations with no strong preference for DNA supercoiling chirality under tension.

## Linked entities

- **Genes:** TERF2 (telomeric repeat binding factor 2) [NCBI Gene 7014]
- **Proteins:** TERF2 (telomeric repeat binding factor 2)

## Full-text entities

- **Genes:** TERF1 (telomeric repeat binding factor 1) [NCBI Gene 7013] {aka PIN2, TRBF1, TRF, TRF1, hTRF1-AS, t-TRF1}, TENT4B (terminal nucleotidyltransferase 4B) [NCBI Gene 64282] {aka PAPD5, TRF4-2, TUT3}, NEB (nebulin) [NCBI Gene 4703] {aka AMC6, NEB177D, NEM2}, TERF2 (telomeric repeat binding factor 2) [NCBI Gene 7014] {aka TRBF2, TRF2}, HMGA2 (high mobility group AT-hook 2) [NCBI Gene 8091] {aka BABL, HMGI-C, HMGIC, LIPO, SRS5, STQTL9}, MYB (MYB proto-oncogene, transcription factor) [NCBI Gene 4602] {aka Cmyb, c-myb, c-myb_CDS, efg}, TP53 (tumor protein p53) [NCBI Gene 7157] {aka BCC7, BMFS5, LFS1, P53, TRP53}
- **Diseases:** cancer (MESH:D009369)
- **Chemicals:** HCl (MESH:D006851), thiol (MESH:D013438), DTT (MESH:D004229), biotin (MESH:D001710), metal (MESH:D008670), HEPES (MESH:D006531), MgCl2 (MESH:D015636), Na (MESH:D012964), sulfo-SMCC (MESH:C071675), amine (MESH:D000588), PNA (MESH:D020135), Ni-NTA agarose resin (-), biotin-16-dUTP (MESH:C087624), digoxigenin (MESH:D004076), PBS (MESH:D007854), 2-mercaptoethanol (MESH:D008623), NaCl (MESH:D012965), salt (MESH:D012492), KCl (MESH:D011189), (3-Aminopropyl)triethoxy silane (MESH:C477625), EDTA (MESH:D004492)
- **Species:** Escherichia coli (E. coli, species) [taxon 562], Homo sapiens (human, species) [taxon 9606], Tobacco etch virus (no rank) [taxon 12227], Bacteriophage sp. (species) [taxon 38018]
- **Cell lines:** BL21 — Homo sapiens (Human), EBV-related Burkitt lymphoma, Cancer cell line (CVCL_M639)

## Full text

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## Figures

4 figures with captions in the complete paper: https://tomesphere.com/paper/PMC10838314/full.md

## References

51 references — full list in the complete paper: https://tomesphere.com/paper/PMC10838314/full.md

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Source: https://tomesphere.com/paper/PMC10838314