# Nephrotic syndrome sera induce different transcriptomes in podocytes based on the steroid response

**Authors:** Martin Bezdicka, Ondrej Cinek, Valerij Semjonov, Katerina Polackova, Eva Sladkova, Jakub Zieg, Moin A. Saleem, Ondrej Soucek

PMC · DOI: 10.14814/phy2.15932 · Physiological Reports · 2024-02-02

## TL;DR

The study shows that sera from children with different types of nephrotic syndrome cause distinct gene expression changes in podocytes, which may help explain steroid response differences.

## Contribution

The study identifies gene expression profiles in podocytes exposed to sera from steroid-sensitive and steroid-resistant nephrotic syndrome patients.

## Key findings

- 34 genes were upregulated and 14 downregulated in steroid-sensitive versus steroid-resistant sera-exposed podocytes.
- Key pathways included redox reactions, DNA repair, mitosis, and cholesterol biosynthesis changes.
- The results suggest that transcriptomic profiles may differentiate nephrotic syndrome subtypes in the future.

## Abstract

As the molecular mechanism of nephrotic syndrome remains largely undiscovered, patients continue to be exposed to the pros and cons of uniform glucocorticoid treatment. We explored whether the exposure of in vitro‐cultivated podocytes to sera from children with steroid‐sensitive or steroid‐resistant nephrotic syndrome induces differences in gene expression profiles, which could help to elucidate the pathogenesis of the steroid response. Human immortalized podocytes were cultivated with patient sera for 3 days. After cell lysis, RNA extraction, 3′‐mRNA libraries were prepared and sequenced. There were 34 significantly upregulated and 14 downregulated genes (fold difference <0.5 and >2.0, respectively, and false discovery rate‐corrected p < 0.05) and 22 significantly upregulated and 6 downregulated pathways (false discovery rate‐corrected p < 0.01) in the steroid‐sensitive (n = 9) versus steroid‐resistant group (n = 4). The observed pathways included upregulated redox reactions, DNA repair, mitosis, protein translation and downregulated cholesterol biosynthesis. Sera from children with nephrotic syndrome induce disease subtype‐specific transcriptome changes in human podocytes in vitro. However, further exploration of a larger cohort is needed to verify whether clinically distinct types of nephrotic syndrome or disease activity may be differentiated by specific transcriptomic profiles and whether this information may help to elucidate the pathogenesis of the steroid response.

Visualization of methods, outcome and conclusion of the nephrotic syndrome serum study.

## Linked entities

- **Diseases:** nephrotic syndrome (MONDO:0005377), steroid-sensitive nephrotic syndrome (MONDO:0044781), steroid-resistant nephrotic syndrome (MONDO:0044765)
- **Species:** Homo sapiens (taxon 9606)

## Full-text entities

- **Genes:** SCEL (sciellin) [NCBI Gene 8796], C2orf72 (chromosome 2 open reading frame 72) [NCBI Gene 257407], IGFL3 (IGF like family member 3) [NCBI Gene 388555] {aka UNQ483}, CLCF1 (cardiotrophin like cytokine factor 1) [NCBI Gene 23529] {aka BSF-3, BSF3, CISS2, CLC, NNT-1, NNT1}, WFDC10B (WAP four-disulfide core domain 10B) [NCBI Gene 280664] {aka WAP12}, CD40 (CD40 molecule) [NCBI Gene 958] {aka Bp50, CDW40, TNFRSF5, p50}, NPNT (nephronectin) [NCBI Gene 255743] {aka EGFL6L, POEM}, CFAP96 (cilia and flagella associated protein 96) [NCBI Gene 441054] {aka C4orf47}, IL13 (interleukin 13) [NCBI Gene 3596] {aka IL-13, P600}, TGFB1 (transforming growth factor beta 1) [NCBI Gene 7040] {aka CAEND1, CED, DPD1, IBDIMDE, LAP, TGF-beta1}, HPX (hemopexin) [NCBI Gene 3263] {aka HX}, IL1B (interleukin 1 beta) [NCBI Gene 3553] {aka IL-1, IL1-BETA, IL1F2, IL1beta}, IL7 (interleukin 7) [NCBI Gene 3574] {aka IL-7, IMD130}, FGFBP1 (fibroblast growth factor binding protein 1) [NCBI Gene 9982] {aka FGF-BP, FGF-BP1, FGFBP, FGFBP-1, HBP17}, HSPA6 (heat shock protein family A (Hsp70) member 6) [NCBI Gene 3310] {aka HSP70B'}, CASK (calcium/calmodulin dependent serine protein kinase) [NCBI Gene 8573] {aka CAGH39, CAMGUK, CMG, FGS4, LIN2, MICPCH}, CCL2 (C-C motif chemokine ligand 2) [NCBI Gene 6347] {aka GDCF-2, HC11, HSMCR30, MCAF, MCP-1, MCP1}, SPINK5 (serine peptidase inhibitor Kazal type 5) [NCBI Gene 11005] {aka LEKTI, LETKI, NETS, NS, VAKTI}, OR2H4P (olfactory receptor family 2 subfamily H member 4 pseudogene) [NCBI Gene 442189] {aka 6M1-7P, OR2H4, OR6-21, OR6-3, dJ80I19.6, hs6M1-7}, IL2 (interleukin 2) [NCBI Gene 3558] {aka IL-2, TCGF, lymphokine}, IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, IL4 (interleukin 4) [NCBI Gene 3565] {aka BCGF-1, BCGF1, BSF-1, BSF1, IL-4}, IL9 (interleukin 9) [NCBI Gene 3578] {aka HP40, IL-9, P40}, NLRP3 (NLR family pyrin domain containing 3) [NCBI Gene 114548] {aka AGTAVPRL, AII, AVP, C1orf7, CIAS1, CLR1.1}, IFNG (interferon gamma) [NCBI Gene 3458] {aka IFG, IFI, IMD69}
- **Diseases:** cardiac rhabdomyoma (MESH:D012207), pericardial effusion (MESH:D010490), nephrotic proteinuria (MESH:D011507), ND (MESH:C537849), hypoalbuminemia (MESH:D034141), MCD (MESH:D012514), edema (MESH:D004487), minimal change disease (MESH:D009402), obstructive/reflux nephropathy (MESH:D005764), steroid (MESH:D016114), NS (MESH:D009404), glomerular disease (MESH:D007674), hyperlipidemia (MESH:D006949), focal segmental glomerulosclerosis (MESH:D005923)
- **Species:** Rattus norvegicus (brown rat, species) [taxon 10116], Homo sapiens (human, species) [taxon 9606], Canis lupus familiaris (dog, subspecies) [taxon 9615]
- **Cell lines:** MS — Neomonachus schauinslandi (Hawaiian monk seal), Finite cell line (CVCL_TZ62)

## Full text

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## Figures

3 figures with captions in the complete paper: https://tomesphere.com/paper/PMC10837055/full.md

## References

39 references — full list in the complete paper: https://tomesphere.com/paper/PMC10837055/full.md

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Source: https://tomesphere.com/paper/PMC10837055