# The NMR structure of the Ea22 lysogenic developmental protein from lambda bacteriophage

**Authors:** Cameron Goddard, Bożena Nejman-Faleńczyk, Logan W. Donaldson

PMC · DOI: 10.1038/s41598-024-52996-3 · Scientific Reports · 2024-02-01

## TL;DR

This paper describes the NMR structure of the Ea22 protein's CTD from lambda bacteriophage and suggests it helps promote lysogeny over lytic development.

## Contribution

The study provides the first NMR structure of the Ea22 CTD and identifies structural features unique to lambda phage Ea22.

## Key findings

- The Ea22 CTD has a mixed alpha–beta fold and dimerizes via salt bridges.
- A conserved mobile loop in the CTD may interact with an unknown host protein to promote lysogeny.
- Structural differences in the CTD distinguish lambda Ea22 from Shiga toxin-producing phage homologs.

## Abstract

The ea22 gene resides in a relatively uncharacterized region of the lambda bacteriophage genome between the exo and xis genes and is among the earliest genes transcribed upon infection. In lambda and Shiga toxin-producing phages found in enterohemorrhagic E. coli (EHEC) associated with food poisoning, Ea22 favors a lysogenic over lytic developmental state. The Ea22 protein may be considered in terms of three domains: a short amino-terminal domain, a coiled-coiled domain, and a carboxy-terminal domain (CTD). While the full-length protein is tetrameric, the CTD is dimeric when expressed individually. Here, we report the NMR solution structure of the Ea22 CTD that is described by a mixed alpha–beta fold with a dimer interface reinforced by salt bridges. A conserved mobile loop may serve as a ligand for an unknown host protein that works with Ea22 to promote bacterial survival and the formation of new lysogens. From sequence and structural comparisons, the CTD distinguishes lambda Ea22 from homologs encoded by Shiga toxin-producing bacteriophages.

## Linked entities

- **Genes:** ea22 (-) [NCBI Gene 3827054], EXO (Phosphate-responsive 1 family protein) [NCBI Gene 826473], xis (excisionase) [NCBI Gene 921027]
- **Proteins:** ea22 (-)

## Full-text entities

- **Genes:** IGKV5-2 (immunoglobulin kappa variable 5-2) [NCBI Gene 28907] {aka B2, IGKV52}, BCL2A1 (BCL2 related protein A1) [NCBI Gene 597] {aka ACC-1, ACC-2, ACC1, ACC2, BCL2L5, BFL1}, CD19 (CD19 molecule) [NCBI Gene 930] {aka B4, CVID3}, Orf55 [NCBI Gene 1446594], Orf63 [NCBI Gene 5962053], IGKV4-1 (immunoglobulin kappa variable 4-1) [NCBI Gene 28908] {aka B3, IGKV41}, Xis [NCBI Gene 2703504], STX1A (syntaxin 1A) [NCBI Gene 6804] {aka HPC-1, P35-1, STX1, SYN1A}, orf60a (DUF1317 domain-containing protein) [NCBI Gene 2703508], GPHA2 (glycoprotein hormone subunit alpha 2) [NCBI Gene 170589] {aka A2, GPA2, ZSIG51}, Exo [NCBI Gene 2703522], DMD (dystrophin) [NCBI Gene 1756] {aka BMD, CMD3B, DXS142, DXS164, DXS206, DXS230}, ST8SIA2 (ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 2) [NCBI Gene 8128] {aka HsT19690, SIAT8-B, SIAT8B, ST8SIA-II, ST8SiaII, STX}, Orf61 [NCBI Gene 5962050], ea22 (-) [NCBI Gene 3827054], orf61 [NCBI Gene 2703506], IGKV7-3 (immunoglobulin kappa variable 7-3 (pseudogene)) [NCBI Gene 28905] {aka B1, IGKV73}, xis [NCBI Gene 13903485], orf63 [NCBI Gene 2703507]
- **Diseases:** bacterial infection (MESH:D001424), EHEC (MESH:D004927), infection (MESH:D007239), food poisoning (MESH:D005517)
- **Chemicals:** ammonium chloride (MESH:D000643), urea (MESH:D014508), H2O2 (MESH:D006861), NaN3 (MESH:D019810), D2O (MESH:D017666), glucose (MESH:D005947), nickel (MESH:D009532), NaCl (MESH:D012965), 13C (MESH:C000615229), hydrogen (MESH:D006859), IPTG (MESH:D007544), mitomycin C. (MESH:D016685), 15N (-), nitrogen (MESH:D009584)
- **Species:** Escherichia coli str. K-12 substr. MG1655 (no rank) [taxon 511145], C. elegans [taxon 328850], Escherichia coli (E. coli, species) [taxon 562], Escherichia coli BL21(DE3) (strain) [taxon 469008], Saccharomyces cerevisiae (baker's yeast, species) [taxon 4932], Homo sapiens (human, species) [taxon 9606], Lambdavirus lambda (species) [taxon 10710], Escherichia coli O157:H7 (no rank) [taxon 83334]
- **Cell lines:** S2 — Drosophila melanogaster (Fruit fly), Spontaneously immortalized cell line (CVCL_Z232)

## Full text

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## Figures

5 figures with captions in the complete paper: https://tomesphere.com/paper/PMC10834534/full.md

## References

48 references — full list in the complete paper: https://tomesphere.com/paper/PMC10834534/full.md

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Source: https://tomesphere.com/paper/PMC10834534