# Genomic Expedition: Deciphering Human Adenovirus Strains from the 2023 Outbreak in West Bengal, India: Insights into Viral Evolution and Molecular Epidemiology

**Authors:** Ananya Chatterjee, Uttaran Bhattacharjee, Rudrak Gupta, Ashis Debnath, Agniva Majumdar, Ritubrita Saha, Mamta Chawla-Sarkar, Alok Kumar Chakrabarti, Shanta Dutta

PMC · DOI: 10.3390/v16010159 · 2024-01-21

## TL;DR

This study analyzes the genome of Human Adenovirus strains from an outbreak in West Bengal to understand their evolution and potential for severe illness.

## Contribution

The study identifies a new recombinant strain of HAd-B1 and highlights its immune evasion and disease severity potential.

## Key findings

- A recombinant strain merging HAd-B1 types 3 and 7 was identified as prevalent in the outbreak.
- Genetic differences in VA-RNAs and the E3 region suggest enhanced immune evasion and prolonged host survival.
- Whole-genome sequencing is emphasized as critical for understanding outbreak potential and illness severity.

## Abstract

Understanding the genetic dynamics of circulating Human Adenovirus (HAdV) types is pivotal for effectively managing outbreaks and devising targeted interventions. During the West Bengal outbreak of 2022–2023, an investigation into the genetic characteristics and outbreak potential of circulating HAdV types was conducted. Twenty-four randomly selected samples underwent whole-genome sequencing. Analysis revealed a prevalent recombinant strain, merging type 3 and type 7 of human mastadenovirus B1 (HAd-B1) species, indicating the emergence of recent strains of species B in India. Furthermore, distinctions in VA-RNAs and the E3 region suggested that current circulating strains of human mastadenovirus B1 (HAd-B1) possess the capacity to evade host immunity, endure longer within hosts, and cause severe respiratory infections. This study underscores the significance of evaluating the complete genome sequence of HAdV isolates to glean insights into their outbreak potential and the severity of associated illnesses.

## Linked entities

- **Diseases:** respiratory infections (MONDO:0024355)

## Full-text entities

- **Genes:** Penton base [NCBI Gene 6870522], MIR197 (microRNA 197) [NCBI Gene 406974] {aka MIRN197, miR-197, miRNA197}, IL18 (interleukin 18) [NCBI Gene 3606] {aka IGIF, IL-18, IL-1g, IL1F4}, CR1 (complement C3b/C4b receptor 1 (Knops blood group)) [NCBI Gene 1378] {aka C3BR, C4BR, CD35, KN}, EIF2AK2 (eukaryotic translation initiation factor 2 alpha kinase 2) [NCBI Gene 5610] {aka PKR, PPP1R83, PRKR}, MIR1973 (microRNA 1973) [NCBI Gene 100302290] {aka hsa-mir-1973, mir-1973}
- **Diseases:** Infection (MESH:D007239), wheezing (MESH:D012135), respiratory (MESH:D012131), hemorrhagic cystitis (MESH:D006470), injury to people or property (MESH:C000719191), VA (MESH:C563443), SARI (MESH:D045169), type 3 and type 7 VA-I (MESH:C565200), febrile illnesses (MESH:D005334), gastroenteritis (MESH:D005759), respiratory infections (MESH:D012141), pharyngitis (MESH:D010612), Conjunctivitis (MESH:D003231), adenovirus infection (MESH:D000257), 3 and 7 VA- (MESH:C537955), ILI (MESH:D007251), Cholera and Enteric Diseases (MESH:D004751), nausea (MESH:D009325), coughing (MESH:D003371), meningoencephalitis (MESH:D008590), nasal discharge (MESH:D019522), breathlessness (MESH:D004417), apnea (MESH:D001049), pneumonia (MESH:D011014), dehydration (MESH:D003681), vomiting (MESH:D014839), viral infections (MESH:D014777)
- **Species:** Enterovirus (genus) [taxon 12059], H3N2 subtype (serotype) [taxon 119210], Human adenovirus B3 (no rank) [taxon 45659], Adenoviridae (family) [taxon 10508], Human adenovirus sp. (species) [taxon 1907210], H1N1 subtype (serotype) [taxon 114727], human metapneumovirus (no rank) [taxon 162145], Human adenovirus 7 (no rank) [taxon 10519], Homo sapiens (human, species) [taxon 9606]
- **Mutations:** 446/A-T, A-T
- **Cell lines:** /23 — Cricetulus griseus (Chinese hamster), Spontaneously immortalized cell line (CVCL_K265), 12 — Mus musculus (Mouse), Hybridoma (CVCL_J992)

## Figures

7 figures with captions in the complete paper: https://tomesphere.com/paper/PMC10820069/full.md

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Source: https://tomesphere.com/paper/PMC10820069