Conditioning Gaussian Processes on Almost Anything
Henry Moss, Lachlan Astfalck, Thomas Cowperthwaite, Colin Doumont, Sam Willis, Philipp Hennig, Christopher Nemeth, Andrew Zammit-Mangion

TL;DR
This paper introduces a new general-purpose Gaussian process inference method that leverages linear diffusion models and ODEs, enabling conditioning on complex, real-world information including non-linear physics and language models.
Contribution
It establishes an explicit equivalence between GPs and linear diffusion models, enabling flexible conditioning beyond conjugacy without bespoke derivations.
Findings
Recovers standard GP conditioning exactly in linear-Gaussian cases
Handles non-linear physics and language models with the same machinery
Minimizes Wasserstein-2 transport cost to reduce numerical stiffness
Abstract
Gaussian processes (GPs) offer a principled probabilistic model over functions, but exact inference is restricted to the linear-Gaussian regime. We establish an explicit equivalence between GPs and a class of linear diffusion models, recasting predictive sampling as an ODE with closed-form Gaussian dynamics and a likelihood-dependent guidance term that admits a simple Monte Carlo approximation. In the linear-Gaussian setting, we recover standard GP conditioning exactly; beyond conjugacy, the same machinery handles any conditioning statement admitting point-wise likelihood evaluation -- including non-linear physics, and, for the first time, natural language via large language models. Whitening isolates the irreducible non-Gaussian dynamics, minimising Wasserstein-2 transport cost and eliminating numerical stiffness. The result is a general-purpose GP inference scheme requiring no bespoke…
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