BrainDyn: A Sheaf Neural ODE for Generative Brain Dynamics

TL;DR

BrainDyn introduces a sheaf neural ODE model that captures continuous brain dynamics on structured graphs, improving generative modeling and analysis of brain activity across multiple modalities.

Contribution

The paper presents BrainDyn, a novel sheaf neural ODE framework that encodes brain activity with anatomical structure and achieves superior forecasting and perturbation prediction.

Findings

BrainDyn outperforms existing models in forecasting brain activity.

It effectively models dynamics across fMRI, EEG, and simulated data.

Supports downstream tasks like in silico perturbation prediction.

Abstract

Efficient neural network models that generate brain-like dynamic activity can be a valuable resource for generating synthetic data, analyzing differences in brain transients under conditions such as testing perturbation activity or inferring the underlying generative dynamics. However, large language models (LLMs) or standard recurrent neural networks (RNNs) ignore the anatomical organization and therefore do not produce components that align with brain regions. On the other hand, graph-based networks often have very simple message passing rules that are not sufficiently expressive for brain-like dynamics. To address this, we introduce BrainDyn, a sheaf neural ordinary differential equation (neural ODE) model for continuous-time dynamics on structured brain graphs. BrainDyn encodes the recent activity history of each brain region using a long short-term memory (LSTM) model over a sliding temporal window to produce hidden states, or stalks, that are projected through learnable restriction maps into edge-specific shared spaces. Discrepancies between neighboring nodes in these shared spaces are characterized by a sheaf Laplacian that can facilitate message passing between neuronal units. The output of these messages is then fed to a neural ODE that governs the continuous-time evolution of neuronal activity. We evaluated BrainDyn on resting-state fMRI (PNC dataset), scalp EEG with focal epilepsy (TUSZ dataset), and simulated activity from the NEST spiking network simulator. BrainDyn achieves strong forecasting ability across modalities, and the resulting representations support downstream tasks including in silico perturbation prediction.