To Adapt or not to Adapt, Rethinking the Value of Medical Knowledge-Aware Large Language Models

TL;DR

This study compares general and clinical large language models on medical question answering tasks, revealing limited benefits of clinical adaptation in English but notable improvements in Spanish with lightweight models.

Contribution

It introduces Marmoka, a family of lightweight clinical LLMs for Spanish, and proposes a perturbation-based benchmark to evaluate model robustness and instruction following.

Findings

Clinical LLMs do not consistently outperform general models in English.

Marmoka models outperform Llama in Spanish clinical tasks.

Both model types show limitations in instruction following and output formatting.

Abstract

BACKGROUND: Recent studies have shown that domain-adapted large language models (LLMs) do not consistently outperform general-purpose counterparts on standard medical benchmarks, raising questions about the need for specialized clinical adaptation. METHODS: We systematically compare general and clinical LLMs on a diverse set of multiple choice clinical question answering tasks in English and Spanish. We introduce a perturbation based evaluation benchmark that probes model robustness, instruction following, and sensitivity to adversarial variations. Our evaluation includes, one-step and two-step question transformations, multi prompt testing and instruction guided assessment. We analyze a range of state-of-the-art clinical models and their general-purpose counterparts, focusing on Llama 3.1-based models. Additionally, we introduce Marmoka, a family of lightweight 8B-parameter clinical LLMs for English and Spanish, developed via continual domain-adaptive pretraining on medical corpora and instructions. RESULTS: The experiments show that clinical LLMs do not consistently outperform their general purpose counterparts on English clinical tasks, even under the proposed perturbation based benchmark. However, for the Spanish subsets the proposed Marmoka models obtain better results compared to Llama. CONCLUSIONS: Our results show that, under current short-form MCQA benchmarks, clinical LLMs offer only marginal and unstable improvements over general-purpose models in English, suggesting that existing evaluation frameworks may be insufficient to capture genuine medical expertise. We further find that both general and clinical models exhibit substantial limitations in instruction following and strict output formatting. Finally, we demonstrate that robust medical LLMs can be successfully developed for low-resource languages such as Spanish, as evidenced by the Marmoka models.