Measuring the Permission Gate: A Stress-Test Evaluation of Claude Code's Auto Mode

TL;DR

This paper evaluates Claude Code's auto mode permission system under stress-test scenarios, revealing significant gaps in scope coverage and high false negative rates compared to production performance.

Contribution

It provides the first independent, detailed assessment of auto mode's scope and safety performance using a comprehensive benchmark with ambiguous authorization scenarios.

Findings

End-to-end false negative rate is 81%, much higher than 17% in production.

36.8% of actions fall outside classifier scope, affecting safety coverage.

Even evaluated actions have a 70.3% false negative rate, indicating coverage gaps.

Abstract

Claude Code's auto mode is the first deployed permission system for AI coding agents, using a two-stage transcript classifier to gate dangerous tool calls. Anthropic reports a 0.4% false positive rate and 17% false negative rate on production traffic. We present the first independent evaluation of this system on deliberately ambiguous authorization scenarios, i.e., tasks where the user's intent is clear but the target scope, blast radius, or risk level is underspecified. Using AmPermBench, a 128-prompt benchmark spanning four DevOps task families and three controlled ambiguity axes, we evaluate 253 state-changing actions at the individual action level against oracle ground truth. Our findings characterize auto mode's scope-escalation coverage under this stress-test workload. The end-to-end false negative rate is 81.0% (95% CI: 73.8%-87.4%), substantially higher than the 17% reported on production traffic, reflecting a fundamentally different workload rather than a contradiction. Notably, 36.8% of all state-changing actions fall outside the classifier's scope via Tier 2 (in-project file edits), contributing to the elevated end-to-end FNR. Even restricting to the 160 actions the classifier actually evaluates (Tier 3), the FNR remains 70.3%, while the FPR rises to 31.9%. The Tier 2 coverage gap is most pronounced on artifact cleanup (92.9% FNR), where agents naturally fall back to editing state files when the expected CLI is unavailable. These results highlight a coverage boundary worth examining: auto mode assumes dangerous actions transit the shell, but agents routinely achieve equivalent effects through file edits that the classifier does not evaluate.