Robust Multi-Source Covid-19 Detection in CT Images

TL;DR

This paper introduces a multi-task deep learning approach for COVID-19 detection in CT images that accounts for data source variability across multiple centers, improving generalization.

Contribution

It proposes a multi-task learning framework with source prediction and a logit-adjusted loss to mitigate bias from uneven data distribution across centers.

Findings

Achieved an F1 score of 0.9098 on validation data.

Attained an AUC-ROC of 0.9647 on validation data.

Demonstrated improved multi-center generalization.

Abstract

Deep learning models for COVID-19 detection from chest CT scans generally perform well when the training and test data originate from the same institution, but they often struggle when scans are drawn from multiple centres with differing scanners, imaging protocols, and patient populations. One key reason is that existing methods treat COVID-19 classification as the sole training objective, without accounting for the data source of each scan. As a result, the learned representations tend to be biased toward centres that contribute more training data. To address this, we propose a multi-task learning approach in which the model is trained to predict both the COVID-19 diagnosis and the originating data centre. The two tasks share an EfficientNet-B7 backbone, which encourages the feature extractor to learn representations that hold across all four participating centres. Since the training data is not evenly distributed across sources, we apply a logit-adjusted cross-entropy loss [1] to the source classification head to prevent underrepresented centres from being overlooked. Our pre-processing follows the SSFL framework with KDS [2], selecting eight representative slices per scan. Our method achieves an F1 score of 0.9098 and an AUC-ROC of 0.9647 on a validation set of 308 scans. The code is publicly available at https://github.com/Purdue-M2/-multisource-covid-ct.